Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31852
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.41 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 232 MIKVGRE--EPAISMDVNGGKIICAKHSELQQVNLKALPE 345
           +IKV  E  +  I ++  GG+I C K S L+ +NL+ L E
Sbjct: 262 IIKVQYELAKHGIVIEELGGEIQCVKISALKGINLRELTE 301


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 412  YPQTIAHNPNGRFVVVCGDGE 474
            Y +T + NP+  F  V GDGE
Sbjct: 1046 YRETSSSNPSYNFSSVSGDGE 1066


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 412  YPQTIAHNPNGRFVVVCGDGE 474
            Y +T + NP+  F  V GDGE
Sbjct: 1042 YRETSSSNPSYNFSSVSGDGE 1062


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 655 GGYMLGVKSISGVAFSFYDW 714
           GGY+LG++ ++ V  +F+ +
Sbjct: 379 GGYLLGIQCLTVVCLAFWSF 398


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = -3

Query: 553 SCRM---PIQTPGPSRTPCSSEPSRCI**THHHRTPPRIYRSDCGLSFV 416
           +CR+   P  T  P + P            HH    P IY++  G+ F+
Sbjct: 441 ACRIHGSPATTAAPPQLPTEESVDALCNTLHHWHHCPEIYKAIEGIRFI 489


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 539 HTNSWAVPNALFLRAIAVYMMNSPSPHTTTNL 444
           +TNS A+P    L  I VY +  P  + +T L
Sbjct: 776 NTNSQAIPRIPILPMIPVYCVPVPQVNDSTIL 807


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 525 PGVCMGIRQLRVCDSREFIFSQSL 596
           PG+ +G+  L  C    +  +QSL
Sbjct: 13  PGITIGVHILDTCGRDTYALNQSL 36


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 181 TMHGSNNVAVGYDEGTIMIKVGREEPA 261
           T +G NNV     E T + K+G EE A
Sbjct: 313 TNNGVNNVEAVQKELTDLGKLGEEEKA 339


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 181 TMHGSNNVAVGYDEGTIMIKVGREEPA 261
           T +G NNV     E T + K+G EE A
Sbjct: 313 TNNGVNNVEAVQKELTDLGKLGEEEKA 339


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 181 TMHGSNNVAVGYDEGTIMIKVGREEPA 261
           T +G NNV     E T + K+G EE A
Sbjct: 313 TNNGVNNVEAVQKELTDLGKLGEEEKA 339


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 586 VKVFKNFKERK 618
           VK+FK FK+RK
Sbjct: 429 VKLFKTFKDRK 439


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 525 PGVCMGIRQLRVCDSREFIFSQSL 596
           PG+ +G+  L  C    +  +QSL
Sbjct: 103 PGITIGVHILDTCGRDTYALNQSL 126


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +1

Query: 616 KSFKPEYGAEGIFGG---YMLGVKSISGVAFSF 705
           K  +P YG   +  G   Y+L + S+S V   F
Sbjct: 25  KRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDF 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,125
Number of Sequences: 438
Number of extensions: 5303
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)