Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31844
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   1.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   2.9  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   2.9  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    27   3.8  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    26   5.0  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   6.6  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   8.7  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +1

Query: 430 EEDLLELRSQAGSLA-ESVESLGPAPKN--KAPENPHQQHASPTKTK 561
           E+  +E RS+   +  +S+ES+G   +   K P+NPH++H  P + +
Sbjct: 128 EKSQVEGRSELSQVENDSLESIGNYDRVEFKRPKNPHEKHFRPLRQR 174


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 391 FKKELATSTSTLAEEDLLELRSQAGSLAESVESLGPAPKNKAPENPHQQHASPTKTKPNH 570
           F + +   T+ L  +D   ++ QA + AES  +  P  K    E P + H      +  +
Sbjct: 339 FLQVIREKTALLMNQDSNSVQPQALAAAESPTTKAPTTKAPTSEAPPKGHVKQLAKQLGN 398

Query: 571 SFLPK 585
            ++P+
Sbjct: 399 IYMPQ 403


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 745 TIASRRSVSKLVSTFSTTKSYTGEYLEQTQRVSLWYDF 632
           T +S+R  +K ++ FS T  YT  Y + T    + Y++
Sbjct: 99  TTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDDVVYEY 136


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 328 SPFEPTEDPSNRSWLSIALLGFKKELATSTSTLAEEDLLELRSQAGSLAESVESLGPAPK 507
           S    +E   N    +I L+G K+ L  ST++  + DL+   S   S   S E+      
Sbjct: 404 SMIRDSESIINERKENIGLIGVKRSLHDSTTSHNKSDLMRTNSDPQSAMRSRENYDATVD 463

Query: 508 NKA 516
            KA
Sbjct: 464 KKA 466


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 436 DLLELRSQAGSLAESVESLGPAP 504
           D+ E RSQ+  L++S +++GP P
Sbjct: 2   DIRESRSQSPELSQSEDAVGPCP 24


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 319  YFTSPFEPTEDPSNRSWLSIALLGFKKELATSTSTLAEEDLLELRSQAGSLAESVES 489
            Y  +P EPT      + L+  +L +KK    +     EE+L  LR QA  L  SV+S
Sbjct: 1228 YGENPDEPTSSARFFNNLNEIILEYKKASTVNQKMEKEEELAFLRLQA--LKASVKS 1282


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 432 RRLVGTEIASGQLGGVSREPRSGSEEQSTRKSPPAAR-VSNENKTES 569
           R  +  +  S Q   VSR P S      TR + PAA   S+E +T S
Sbjct: 152 RTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSEPRTFS 198


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 356 DGSSVGSNGDVK*RLPFFFLLVVGL 282
           +  SVG+N D+K  LP F ++V+ +
Sbjct: 695 ENRSVGANSDIKVSLPTFRMVVLSI 719


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,887
Number of Sequences: 5004
Number of extensions: 60784
Number of successful extensions: 254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)