Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31836
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   3.5  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   3.5  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   4.6  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   4.6  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 199 YHHPAYFRREAVMRFGS 249
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 408 FFFFFIASMDGGAHSPPGVKWLVKPIDIYNVNAPPT 301
           F+FF I     G ++  G+ W+ K   IY+VN  P+
Sbjct: 136 FWFFLIFYY--GIYNAVGLLWITKLFHIYSVNWCPS 169


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 381 DGGA-HSPPGVKWLVKPIDIYN 319
           DGG  H P  V WL++P DIY+
Sbjct: 234 DGGPLHDPNTVMWLLRP-DIYS 254


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 114 PEFRHYKMYVRRWF-PAR*FCFSWLSSRHTH 25
           PEFR   + +  +F PA  F + W +  HTH
Sbjct: 354 PEFRVPVILLGTFFFPAGLFIYGWTAQYHTH 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,730
Number of Sequences: 5004
Number of extensions: 34242
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)