Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31836
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0122 + 1495426-1495815                                           27   7.7  
01_06_1749 - 39636951-39638102                                         27   7.7  
01_03_0001 + 11500567-11500696,11503312-11503397,11503515-115040...    27   7.7  

>10_01_0122 + 1495426-1495815
          Length = 129

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 411 FFFFFFIASMDGGAHSPPGVKWLVKPIDIYNVN 313
           FFFFFF   + G   +  G +  + P+ +Y V+
Sbjct: 15  FFFFFFFFFLSGCLRAGAGDRGALDPVLLYGVD 47


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 278 SIVTTATPPFEPKRITA 228
           S+ + A PPF+P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>01_03_0001 +
           11500567-11500696,11503312-11503397,11503515-11504097,
           11504242-11504474
          Length = 343

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 394 YCFDG-WRSSQPTWC*VVSEAHRHLQRKCATYLEINSKVS 278
           Y  +G WR + P     +S+ HRH+     +Y   N+K +
Sbjct: 277 YTAEGNWRGTTPQNMHPISQVHRHVSEPPPSYFSNNAKAN 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,411
Number of Sequences: 37544
Number of extensions: 238189
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)