Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31826
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 81 1e-16
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 54 2e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 46 4e-06
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 38 0.001
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 30 0.28
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 1.5
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.6
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 4.6
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 6.1
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 8.1
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 8.1
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 81.4 bits (192), Expect = 1e-16
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Frame = +3
Query: 198 SEELAHESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMA 377
+ +L E+ EWI N D+ + L+ G +LC++ I+ S+M
Sbjct: 2 TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57
Query: 378 FKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTY--GK-P 545
F MENI+AF+ A+Q+ VP+Q+ FQT DL+ER+N V+ + S R A GK
Sbjct: 58 FVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVR 117
Query: 546 SIGPKEAEKNVRNFSEEQLRA-GQGVISLQYGS 641
+GPK AEK R FS +Q R +GV SLQYGS
Sbjct: 118 GLGPKLAEKKPRVFSAQQQREFREGVNSLQYGS 150
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +3
Query: 216 ESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCME 392
E+ +WI G G F + L++G +L L P+ +IK ++ + F+ +
Sbjct: 46 EAKKWIEECLG---TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102
Query: 393 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 515
NIN FL+ +G+P F+ D++E +NL V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +3
Query: 213 HESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCM 389
HE+ +W+ E N ++D+F + L +G +LC+LA +P + ++ +
Sbjct: 68 HEAKKWLEE---ETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNT 124
Query: 390 ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 515
+NAF +G+ F+T DL R N+ V+ CL +L
Sbjct: 125 VYLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 37.9 bits (84), Expect = 0.001
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Frame = +3
Query: 126 EMANNRATKSGFAAEAQRKINSKYSEELAHESLEWIR-MITGEPENTSGDMDN-----FY 287
E+ R T G ++ IN EE E ++ I ++ G+P+ S N F+
Sbjct: 91 EVKKGRITIKGSSSSVSHTIN----EEERREFIKHINSVLAGDPDVGSRVPINTETFEFF 146
Query: 288 EVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 431
+ KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +3
Query: 279 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 431
+F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 30.3 bits (65), Expect = 0.28
Identities = 19/89 (21%), Positives = 35/89 (39%)
Frame = +3
Query: 351 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAG 530
++ +S A E + AF+E A+Q G+P E W+ + + +L +
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177
Query: 531 TYGKPSIGPKEAEKNVRNFSEEQLRAGQG 617
Y + +NVR + G+G
Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 407 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLR 538
P+ + V CTG G+ V +S D L +TG+ G L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +3
Query: 294 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 470
LK+ T + L+++IHPN +++ S +N+ N E + L + + VD +
Sbjct: 6 LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57
Query: 471 ERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRN 584
E+ L + I +++ TY K S+G +N N
Sbjct: 58 EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 654 WRPYLNRTEEI*LPDQPGAAPRRSFARSSQLLSVLLTASRRFQ 526
W YLN +E +PD P ++ + +L V+ T R ++
Sbjct: 112 WNAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRVYK 154
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +2
Query: 26 PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 202
P PP L S H +FT F+ L R+ + S RI +P D QI
Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225
Query: 203 GAG 211
G
Sbjct: 226 RTG 228
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = -1
Query: 461 DSLKSFLCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDVVG*LAQKSAVFKHFVE 282
D L+ FLC+ SC F + H + +D + V G Q S + H+
Sbjct: 118 DELRYFLCKKESDSCYFGNASSSFHFVTSPSTFFIRYDD-NITVAGINVQDSLSYSHYQA 176
Query: 281 VVHIP*GVLW--FAGDHPNPFQGLVG 210
+ G+ + P++G++G
Sbjct: 177 LPDFQFGITLKEYVPSSMLPYKGVLG 202
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 443 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 330
L R+ LS +D++ L+G + C HV D+
Sbjct: 67 LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,299
Number of Sequences: 5004
Number of extensions: 69181
Number of successful extensions: 219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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