Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31824
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 197 1e-51
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 197 1e-51
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 197 1e-51
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 111 9e-26
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 105 8e-24
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 63 4e-11
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 47 3e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 39 7e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 38 0.001
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 34 0.021
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 34 0.021
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.35
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.46
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 25 2.0
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.6
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.5
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 7.5
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 9.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 9.9
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 197 bits (480), Expect = 1e-51
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = +3
Query: 81 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 260
GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITI
Sbjct: 14 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITI 73
Query: 261 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQ
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQ 108
Score = 159 bits (385), Expect = 4e-40
Identities = 72/102 (70%), Positives = 87/102 (85%)
Frame = +2
Query: 365 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 544
ADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFE
Sbjct: 109 ADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFE 166
Query: 545 EIKXEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPW 670
EI E S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW
Sbjct: 167 EIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPW 208
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 197 bits (480), Expect = 1e-51
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = +3
Query: 81 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 260
GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITI
Sbjct: 14 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITI 73
Query: 261 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQ
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQ 108
Score = 159 bits (386), Expect = 3e-40
Identities = 73/102 (71%), Positives = 87/102 (85%)
Frame = +2
Query: 365 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 544
ADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFE
Sbjct: 109 ADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFE 166
Query: 545 EIKXEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPW 670
EI E S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW
Sbjct: 167 EIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPW 208
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 197 bits (480), Expect = 1e-51
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = +3
Query: 81 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 260
GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITI
Sbjct: 14 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITI 73
Query: 261 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQ
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQ 108
Score = 159 bits (385), Expect = 4e-40
Identities = 72/102 (70%), Positives = 87/102 (85%)
Frame = +2
Query: 365 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 544
ADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFE
Sbjct: 109 ADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFE 166
Query: 545 EIKXEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPW 670
EI E S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW
Sbjct: 167 EIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPW 208
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 111 bits (267), Expect = 9e-26
Identities = 50/95 (52%), Positives = 65/95 (68%)
Frame = +3
Query: 78 SGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 257
+GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER RG+T
Sbjct: 183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVT 242
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 362
+D+A FE+ K I DAPGHRDFI MI G S
Sbjct: 243 MDVASTTFESDKKIYEIGDAPGHRDFISGMIAGAS 277
Score = 87.4 bits (207), Expect = 2e-18
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = +2
Query: 362 SADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 541
SAD AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D +SE RF
Sbjct: 278 SADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRF 335
Query: 542 EEIKXEVSSY-IKKIGYNPXAVAFVPISGWHGDNMLE 649
+EIK VS + IK +G+ V FVPIS G N+++
Sbjct: 336 QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 105 bits (251), Expect = 8e-24
Identities = 45/95 (47%), Positives = 66/95 (69%)
Frame = +3
Query: 81 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 260
GHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD ERE+G T+
Sbjct: 245 GHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTV 304
Query: 261 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
++ FET +++DAPGH+ ++ NMI G SQ
Sbjct: 305 EVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQ 339
Score = 91.1 bits (216), Expect = 1e-19
Identities = 44/106 (41%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Frame = +2
Query: 365 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 544
AD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++
Sbjct: 340 ADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYK 399
Query: 545 EIKXEVSSYIKKI-GYNPXA-VAFVPISGWHGDNMLE--PSTKMPW 670
E ++S +++++ GYN V ++P+S + G N+ + S+ PW
Sbjct: 400 ECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPW 445
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 62.9 bits (146), Expect = 4e-11
Identities = 38/106 (35%), Positives = 56/106 (52%)
Frame = +3
Query: 51 KRLTLTLSSSGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 230
K+ + + + GHVD GK+T T I KC ++G+ SF +DK
Sbjct: 50 KKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDKA 94
Query: 231 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 368
E+ RGITI A ++ET+ + +D PGH D+IKNMITG + +
Sbjct: 95 PEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATM 140
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +2
Query: 368 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 547
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E E
Sbjct: 141 DGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEME 193
Query: 548 IKXEVSSY 571
++ +S Y
Sbjct: 194 MRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 46.8 bits (106), Expect = 3e-06
Identities = 30/84 (35%), Positives = 41/84 (48%)
Frame = +3
Query: 84 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITID 263
H+D+GK+T T ++Y G F + G V+D L AER+RGITI+
Sbjct: 36 HIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQRGITIN 82
Query: 264 IALWKFETSKYYVTIIDAPGHRDF 335
A F + +ID PGH DF
Sbjct: 83 SAAISFTWRNQRINLIDTPGHADF 106
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 38.7 bits (86), Expect = 7e-04
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Frame = +3
Query: 78 SGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 257
S H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE+GIT
Sbjct: 65 SAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELEREKGIT 114
Query: 258 IDIA----LWK---------------FETSKYYVTIIDAPGHRDF 335
I A W+ FE S Y + IID PGH DF
Sbjct: 115 IQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDF 158
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 219 LDKLKAERERGITIDI----ALWKFETSKYYVTIIDAPGHRDF 335
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDF 137
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 33.9 bits (74), Expect = 0.021
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +3
Query: 36 KNGQGKRLTL-TLSSSGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSF 203
+N GK + +S HVD GKST T L+ K G I K +F + A E +G
Sbjct: 10 RNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVT 69
Query: 204 KYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 335
+ + L AE D+ + + + V +ID+PGH DF
Sbjct: 70 IKSTAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDF 111
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 33.9 bits (74), Expect = 0.021
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +3
Query: 36 KNGQGKRLTL-TLSSSGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSF 203
+N GK + +S HVD GKST T L+ K G I K +F + A E +G
Sbjct: 10 RNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVT 69
Query: 204 KYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 335
+ + L AE D+ + + + V +ID+PGH DF
Sbjct: 70 IKSTAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDF 111
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 222 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 344
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 259 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 131
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.0 bits (52), Expect(2) = 2.0
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDF 335
GK + A+ + + GIT I + F+ ++T +D PGH F
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAF 233
Score = 20.6 bits (41), Expect(2) = 2.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 33 TKNGQGKRLTLTLSSSGHVDSGKST 107
+K G ++ GHVD GK+T
Sbjct: 162 SKKDSGPLRPPVVTLMGHVDHGKTT 186
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 283 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 152
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 249 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 151
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 228 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 100
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQL 368
Y + +ID+PGH DF + ++ S+L
Sbjct: 94 YLINLIDSPGHVDF-SSEVSSASRL 117
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 183 PGPPSRTSRWYVCQYHHIC 127
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 9.9
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +3
Query: 81 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERERGI 254
GHVD+GK+ +L + +++ E Q++G F + K K ++G
Sbjct: 491 GHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKG- 542
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 362
K + + + IID PGH F GTS
Sbjct: 543 -------KLQYNIPGLLIIDTPGHESFTNLRSRGTS 571
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,385
Number of Sequences: 5004
Number of extensions: 56711
Number of successful extensions: 189
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -