Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31821
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.68 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.8  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 113 LLNTHFFEIFSVELSAMAIGLNSLNLNIDIKIQLECL 3
           L  +H  +   ++L  +    N  N++ID+K+  EC+
Sbjct: 83  LEKSHIIQNDEIQLDKLVEMANRKNISIDVKMLSECI 119


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
          protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 91 KFFQWNFLPWLSDLIH 44
          KF  WN  P  SDL+H
Sbjct: 28 KFLGWNVPPEYSDLVH 43


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 477  FGKRHFVSGW*SSLH 521
            F  RHF+SG  S+LH
Sbjct: 986  FEHRHFISGIDSNLH 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.132    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,617
Number of Sequences: 438
Number of extensions: 2809
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)