Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31819
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    33   0.037
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.45 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   1.4  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   4.2  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   7.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   7.4  

>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = +3

Query: 429 KDV*EINFFSINNDFRLI---NTIINKLLQIAKPNVLYFRLLKKKRFDAKNISFLADVTI 599
           K +  INFFS++ND + +   NT  + LL       LY R LKK     ++  +LAD T+
Sbjct: 97  KSLSNINFFSLSNDLKRLEEYNTSCSVLLS------LYQRQLKKISTTIESY-YLAD-TL 148

Query: 600 RHFVNYILSALSFFNVQK 653
           RH  N +      +N+QK
Sbjct: 149 RHNQNILNLCERIYNIQK 166


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +1

Query: 109 VKILHVFLNEYNQCIFLIF*TNANDDDKLSFFFV*DNFLINTVQVC--FSLKWL*TKYVL 282
           +K +   +  ++ C+ ++F       + LSFFF+   F +N+++ C  FS K   T Y L
Sbjct: 12  IKNIRPLIPSFHVCLLIMF-LILYSQEILSFFFMCSKFSMNSLKFCVLFSFK---TVYSL 67

Query: 283 LELRVIYKQNVSDIFYFYFY 342
           L+L    K  +  + Y + Y
Sbjct: 68  LKL---IKTLIRKLLYCFHY 84


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 441 EINFFSINNDFRLINTIINKLLQIAKPNVLYFRLLKKKRFDAKNIS 578
           E + +  N  F L N I+N +LQ  K    + RL + +RF    +S
Sbjct: 246 EFSLYKTNISFYLSNFIVNGVLQYRKEFQRWLRLYEFRRFGLIGLS 291


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 161 IRNIH*LYSFKNTCNIFTSLH---TGNSFIIHLTVRRLTLH 48
           + NIH LYSF +     + LH   +GNS  + LT   + +H
Sbjct: 343 VMNIHPLYSFSSKSLESSKLHYSSSGNSLFVVLTDAVIIVH 383


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 237 TSVF*FEVVMNEIRFIGITCNLQTECK*YFLFLF 338
           TSV+ F ++ N + ++GI          YF+FL+
Sbjct: 346 TSVYHFTIIENGLVYLGILVGALITLACYFVFLY 379


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 450 FFSINNDFRLINTIINKLLQIAKPNVLYFR 539
           FF +++ F L  +    ++Q A+ ++LYFR
Sbjct: 225 FFELHSKFCLSTSTYESVVQAAQDSLLYFR 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,137
Number of Sequences: 5004
Number of extensions: 47560
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)