Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31810
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 150 1e-37
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 140 2e-34
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 62 5e-11
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 1.6
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 27 2.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.1
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 3.7
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 8.6
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 150 bits (364), Expect = 1e-37
Identities = 72/105 (68%), Positives = 90/105 (85%)
Frame = +3
Query: 75 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 254
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 255 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAI 389
YGLVV+VLI+G L++ + LY GFI LGAGL+VG +GLAAGFAI
Sbjct: 67 YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAI 109
Score = 33.5 bits (73), Expect = 0.025
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2
Query: 380 FRHSIVGDAGVRGTAQQP 433
F IVGDAGVRGTAQQP
Sbjct: 107 FAIGIVGDAGVRGTAQQP 124
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 436 LFVGMILILIFXEV 477
LFV MILILIF EV
Sbjct: 126 LFVAMILILIFAEV 139
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 140 bits (338), Expect = 2e-34
Identities = 63/105 (60%), Positives = 82/105 (78%)
Frame = +3
Query: 75 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 254
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 255 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAI 389
YGLV++VLIAG + +Y L+ GFIHL AGLAVG +G+AAG+AI
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAI 111
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 62.5 bits (145), Expect = 5e-11
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Frame = +3
Query: 93 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 272
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 273 VLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLAAGFAI 389
++ + + + PA + Y GF G+ VG L G +
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCV 149
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 78 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 257
+YGPF+ A+ FS Y +G G + S+ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 258 GLVVAVLIAGAL 293
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 219 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIAS 395
II +AG+IA + +++ IAG + G ++ G L LA GF I +
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVT 245
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 54 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 218
+K+A ++P I F+G ++G + F+ + + ++ G S LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483
Query: 219 IIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLY 320
+ P+V++ IIA + + +++ L + + Y +Y
Sbjct: 1484 VAPLVLSAIIAFFFFCLGIMLRPILGDRSKTYGVY 1518
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 332 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 219
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 33 TGPKNCDDYLH 1
TGP N DDY+H
Sbjct: 369 TGPSNTDDYIH 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,433
Number of Sequences: 5004
Number of extensions: 52130
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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