Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31806
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    28   0.57 
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   4.0  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.3  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   5.3  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   7.0  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    24   9.3  

>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 23  TSFPEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 154
           T+ P+ V NFL+L RP+ VL   +  +S   +    +E T++A D
Sbjct: 233 TATPDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 372 DHVRNVLDEARKRLAEVPKD 431
           D   N L+EA+KRLA +P D
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD 200


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 113 RHGCCLFLTPLTRKTADIE 57
           RHGCC+    L R   DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 330 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 437
           M +QARL+ L K+R+    +  ++ +K LAE+ +D K
Sbjct: 92  MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 327 SKIGSSSEVQPASPSFHSI 271
           S +G+SS+ +   P FHS+
Sbjct: 164 SSVGNSSDFREVEPGFHSV 182


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 321 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDT 434
           + + L +   K LK++ED  + ++ + RKR    P+D+
Sbjct: 423 NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRRYRPRDS 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,891
Number of Sequences: 5004
Number of extensions: 23579
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)