Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31806
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891...    59   1e-09
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    58   2e-09
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670...    54   7e-08
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893...    27   5.2  
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    27   9.1  

>05_05_0231 +
           23488588-23488689,23488775-23488875,23489012-23489168,
           23489365-23489594,23489696-23489795,23489878-23489916
          Length = 242

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 36/110 (32%), Positives = 53/110 (48%)
 Frame = +3

Query: 114 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 293
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ +I         
Sbjct: 1   MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60

Query: 294 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLY 443
                  I+ S  LN AR+KVL+ ++  V  + ++A K L  V KD   Y
Sbjct: 61  QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAY 110


>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 34/103 (33%), Positives = 53/103 (51%)
 Frame = +3

Query: 114 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 293
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ KI         
Sbjct: 1   MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 294 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEV 422
                  I+ S  LN +R+KVL+ ++D V ++ ++A K+L  V
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRV 103


>01_01_0858 -
           6699126-6699128,6699219-6699318,6700052-6700278,
           6701032-6701188,6701422-6701522,6702147-6702251
          Length = 230

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 31/110 (28%), Positives = 52/110 (47%)
 Frame = +3

Query: 114 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 293
           ++D DV +Q+K M  FI Q                F IEK +LV+ ++ +I         
Sbjct: 2   MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61

Query: 294 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLY 443
                  I+ S  LN +RL+VL+ ++D   ++L+ A K L  + +D  +Y
Sbjct: 62  QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVY 111


>05_06_0131 -
           25888434-25888931,25889105-25889155,25889249-25889331,
           25889733-25889826,25890188-25890310,25890909-25891154
          Length = 364

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 393 QVHYVRDLHELSVPSDELGSACSKIGSSSEVQP 295
           Q H  +   E S P   L S+C +I SS+   P
Sbjct: 219 QTHSAKSCEESSEPFSRLASSCHQIQSSNRTHP 251


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 342 ARLKVLKVREDHVRNVLDEARKRLAEVPKD 431
           +RL++LK R+D++ N LD+A K+  E   D
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTD 854


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,925,556
Number of Sequences: 37544
Number of extensions: 173204
Number of successful extensions: 419
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)