Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31804
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    29   0.63 
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.4  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   5.9  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 151 YSGIVKN*ILKKVRLLPKIQLVKIVSTCKINTNIYLYSNITVLLLSL 291
           Y G+V+     K+R   +I ++K++   +INTN Y + N++   L L
Sbjct: 574 YDGLVEISCDFKIRRTFRIPVLKLLLQLRINTNDYCFVNLSPAQLEL 620


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 288 FVRAEKKNKDKKYTHYVFRILFVNIKKLEKRNLFVYWHF 404
           F +A +    K+ T Y F+ LF  I K EK  L  YWHF
Sbjct: 178 FHKAARNQDQKEITRY-FK-LFPLIGK-EKEGLEAYWHF 213


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 333 YVFRILFVNIKKLEKRNLFVYWHFCLR 413
           ++FR   + IK  EK   +V+ ++C R
Sbjct: 794 FIFRKCVIGIKSFEKLQSYVFTYYCER 820


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 387 FVYWHFCLRNVVW 425
           FVYW+F +RN  W
Sbjct: 433 FVYWNFAVRNGKW 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,226
Number of Sequences: 5004
Number of extensions: 42381
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)