Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31804
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U80024-10|AAK18891.1|  297|Caenorhabditis elegans Serpentine rec...    31   0.76 
U80024-7|AAW88409.1|  295|Caenorhabditis elegans Serpentine rece...    29   3.1  
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical
           protein T22H2.2 protein.
          Length = 527

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +1

Query: 133 VHSYFSYSGIVKN*ILKKVRLLPKIQLVKIVSTCKINTNIYLYSNITVLL-LSLYEQRKK 309
           V  +F  SG +   +LK+    P   L+ I  T +    + LY  +T  + +  +     
Sbjct: 43  VDQFFVLSGFLMCMLLKRAEKEPPCTLITIFYTKRFKRILPLYLLLTKAIDIFTHTWSLS 102

Query: 310 TKTRNILIMFFVYFSST*--KNWKKGIYSFIGIFAYVTLFGKSHTL 441
            + +   ++ F++  +T     ++ G Y+FIGI +Y   F    ++
Sbjct: 103 VEIQFYFLIPFIFLLATKLPSKFENGYYAFIGIVSYSFFFSSPQSV 148


>U80024-10|AAK18891.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 11 protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 244 TNIYLYSNITVLLLSLYEQRKKTKTRNILIMFF 342
           T+I + S+   + +++Y  +K TKTRN +I+FF
Sbjct: 22  TSIGVLSSFLTIFMNIYFIKKITKTRNKMILFF 54


>U80024-7|AAW88409.1|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 7 protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +1

Query: 229 TCKINTNIYLYSNITVLLLSLYEQRKKTKTRNILIMFFV-YFSST*KNWKKGIY-SFIGI 402
           T  + T++ + S++  +++++Y  +K  KTR  +I+FF   F     N   G Y +F  +
Sbjct: 13  TAVLVTSLGVVSSVYTIIMNVYFIKKIGKTRQKMILFFYRLFLDVVYNVLAGAYMTFSIL 72

Query: 403 FAYVTLFGKSHTLFVXII 456
           ++  T   + H  F+  I
Sbjct: 73  YSCFTEEFREHQAFIVYI 90


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 561 NTFLRRIYLYSIYF*SRISWFVINIPVTISRSNHFNYXHKQSV*FSK 421
           N FL+ I+ +SIYF    + F+  + +++ R   FNY  +Q    SK
Sbjct: 107 NHFLKIIFFFSIYF--NYTAFLFPLLLSVLRLIPFNYPTRQKQLCSK 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,765,236
Number of Sequences: 27780
Number of extensions: 230659
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)