Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31800
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   1.1  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    27   2.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   5.8  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   7.7  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    25   7.7  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    25   7.7  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   7.7  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 302 SPFSCNKCDSCCRSSEPSIEPLSSRXKSAVEAN 400
           SPF  + CDS    S   IEP+SSR  S V  N
Sbjct: 257 SPF--DSCDSFHSGSSIPIEPVSSRQSSVVNNN 287


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 293 LKMSPFSCNKCDSCCRSSEPSIEPLSSRXKSAVEANMHGLRHSYSIG*VTRFPEKCQVDE 472
           +K+ PF  N   +  R +EP I P  +        N+  L+ S S+  +T  P+  Q  E
Sbjct: 479 VKLHPFFKNVQWALLRHTEPPIIPKLAPIDEKGNPNISHLKESKSLD-ITHSPQNTQTVE 537

Query: 473 AKSSTIPAA 499
              S +  A
Sbjct: 538 VPLSNLSGA 546


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 115 PGVPIAPLLSFWQWPEQIDCENLSSL 192
           P + +AP+++  QW E+ID     +L
Sbjct: 405 PTLVVAPVVAIMQWKEEIDTHTNKAL 430


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 326 HIYCRRMETSLGWGEPQPFTPS 261
           HI+C R  T +GW     + PS
Sbjct: 69  HIHCCRCHTYIGWKYVSSYEPS 90


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 16  NEGNTLPVGLGSKPRRWHQQVRRVLPIL*LHP 111
           NEG T   G    PR+ H+ +R+V  I   HP
Sbjct: 226 NEGTTARWGTKRLPRKTHRGLRKVACIGAWHP 257


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 16  NEGNTLPVGLGSKPRRWHQQVRRVLPIL*LHP 111
           NEG T   G    PR+ H+ +R+V  I   HP
Sbjct: 226 NEGTTARWGTKRLPRKTHRGLRKVACIGAWHP 257


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +2

Query: 341 SSEPSIEPLSSRXKSAVEANMHGLRHSYSIG*VTRFPEKCQVDEAKSSTIPAATKKSMPS 520
           +S PS+  L+S  KS        +    SIG  TR  E      AK+        +S+ S
Sbjct: 210 ASRPSLPDLTSADKSQPSDEAESITRKNSIGMSTRSDESTAEKLAKAEVATPTNSRSI-S 268

Query: 521 KVSLF 535
             SL+
Sbjct: 269 HSSLY 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,862
Number of Sequences: 5004
Number of extensions: 53527
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)