Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31797
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0207 + 23272777-23272977,23273831-23275330                       29   3.5  
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741...    28   8.1  
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771...    28   8.1  

>05_05_0207 + 23272777-23272977,23273831-23275330
          Length = 566

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 157 IQMWRPIGRSNVKFKIYREDSTVIV 231
           IQ WRP G S+VKFK     +  +V
Sbjct: 409 IQNWRPTGNSSVKFKTSAATTAAVV 433


>05_07_0274 -
           28873531-28873644,28873727-28873981,28874111-28874179,
           28874277-28874415,28874511-28875076,28875225-28875326,
           28875425-28875491,28875576-28876072,28876148-28876212,
           28876470-28876567,28876652-28876694,28876870-28876963,
           28877325-28877360,28877454-28877542,28877667-28877788,
           28878193-28878404
          Length = 855

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 201 FKLDIRPANRSPHLDSWNDKENQNRMNI 118
           F +DI+P     HLDSW  +  ++   I
Sbjct: 323 FHVDIKPPEEETHLDSWKTQMEEDTKKI 350


>02_03_0077 +
           14874273-14874571,14875304-14876150,14876878-14877147,
           14877313-14878065
          Length = 722

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 672 NCPKVTLPVLIIVDSNIINKLQTVNMVFANLSQNAYRCNSSSVRLRQYIA 523
           NC ++T+P+  I +S+             N++ N   C+SSS  ++ Y+A
Sbjct: 634 NCHELTIPLQTIEESSAGGAYSETR----NMTTNERECSSSSTPVKMYVA 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,858,826
Number of Sequences: 37544
Number of extensions: 280119
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)