Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31797
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ...    29   2.4  
U58748-1|ABN43078.1|  173|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   7.3  

>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
            protein C42C1.4a protein.
          Length = 1259

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 12   CITCHPWTSQFGYVRKIGTYLVACCSTNVCNRC 110
            CITC     + GYV + G +    CSTN+   C
Sbjct: 1185 CITCEQPMHKSGYVFRCGHFQHIECSTNIDRTC 1217


>U58748-1|ABN43078.1|  173|Caenorhabditis elegans Hypothetical
           protein ZK180.7 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 81  CCSTNVCNRCIYLYSCDSGSLCHSMNPNVETD 176
           CCSTN+CN   +    D   L  S   NV TD
Sbjct: 117 CCSTNLCNDVNHKRVYDKYGLLISFADNVFTD 148


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 6    DICITCHPWTSQFGYVRKIGTYLVACCSTNVCNRCIYLYSCDS 134
            +ICI CHP T+ F     +  +   C    +C   IY +SC +
Sbjct: 1683 EICIVCHPDTTIFRCTNIVNLH-EPCL---ICGNNIYKFSCSN 1721


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,802
Number of Sequences: 27780
Number of extensions: 297159
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)