Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31795
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579...    27   3.1  

>09_02_0207 -
           5793848-5794276,5794523-5794645,5794742-5795250,
           5795543-5795648,5795798-5795959,5796094-5796144,
           5796229-5796394,5796624-5797093
          Length = 671

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
 Frame = -1

Query: 344 EQVHS-SV*LFHSEXRNELTERTCRRMSYAYVSRCYGDRSVSVNLXXXXXXXXIKHETHA 168
           E VH  S+    S+  N  T  T R+   A V    GD  +  +            ET +
Sbjct: 383 ETVHQVSLMQLQSKNHNTPTHNTYRQSLSASVDSSPGDFEIRFSPNGSEYGLEKTKETKS 442

Query: 167 TRKTNEHMKNF 135
             KTN H  NF
Sbjct: 443 ENKTNVHATNF 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,922,514
Number of Sequences: 37544
Number of extensions: 125430
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)