Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31795
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-7|AAA27972.1|  469|Caenorhabditis elegans Hypothetical pr...    30   0.41 
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    27   5.0  

>L14433-7|AAA27972.1|  469|Caenorhabditis elegans Hypothetical
           protein C50C3.1 protein.
          Length = 469

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 105 VQSQKSPPLPQCIYVKLLTGQDIYERWIDTSDRM 4
           + S  SP +PQC+     T Q I+E   DTSD +
Sbjct: 273 ITSGSSPDIPQCVSPVQNTYQQIFENNTDTSDEV 306


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 17  VSIHLSYISCPVRSLTYIH*GRGGDFCDWTHKFFGPGK 130
           VS    Y+ CP   L Y H  +  +FCDW H  F  G+
Sbjct: 46  VSGEARYMDCP-EDLVY-H--KNLEFCDWRHNVFECGE 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,074,523
Number of Sequences: 27780
Number of extensions: 118494
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)