Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31793
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    27   2.4  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    27   2.4  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    27   3.1  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   4.1  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   5.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.5  

>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 576 PCINCCHSSNI-QQLCSVEWTG 514
           P +N CHSS I   L +V W G
Sbjct: 241 PLVNTCHSSGIASSLANVRWIG 262


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 91  YRKKIIYGVITILIFIIFSHPGLYG 165
           +++K+++  +T+LIF++ S   LYG
Sbjct: 29  FKQKMLWTGVTLLIFLVMSQVPLYG 53


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 405 YDDCCTKFWSAVLWYIFTPVSDAMTL 328
           YD+C TK+ +A +W     V D +TL
Sbjct: 124 YDECQTKYGNANVWKYCCQVFDFLTL 149


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 490 FDSVSVGGERTCACIPGTHEVVLPCHDKV 404
           +DS     + T   +PG+HE++ P H K+
Sbjct: 63  WDSEENEDDITDVGVPGSHEIMFPGHSKI 91


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 181 FIEKHNILKYLHEEVNVNLTSNAFTNCDYHD 273
           F+E H+  ++ HE  ++ L  NA T   + D
Sbjct: 303 FLENHDFPRFFHETKDIALALNALTALIFMD 333


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +1

Query: 178 EFIEKHNILKY-----LHEEVNVNLTSNAFTNCDYHDIINDETTLSPNLIEGDLVE 330
           E ++ +N+L +     LH +V++ L + A +  + + ++ND  +    L    LVE
Sbjct: 748 ETVDLYNLLSFCSAFILHSQVSMGLVNLASSFLETYALVNDRVSSISGLNRSQLVE 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,983
Number of Sequences: 5004
Number of extensions: 57128
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)