Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31793
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1184 + 26785739-26786113 32 0.46
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640... 31 1.1
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544... 31 1.1
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586... 31 1.1
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 30 1.4
02_05_1183 + 34788219-34788533,34788733-34788930,34789010-347893... 30 1.9
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 29 2.4
08_02_0043 - 11550185-11550418,11551525-11551568,11552134-115521... 29 3.2
01_07_0388 + 43236629-43237612 29 3.2
04_04_0452 + 25342306-25342552,25342658-25342785,25342868-253431... 29 4.3
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162... 29 4.3
09_03_0045 - 11860245-11860450,11861539-11861725 28 5.6
03_06_0673 - 35446537-35446629,35447001-35448548 28 5.6
03_01_0473 - 3639533-3639598,3639848-3639955,3640037-3640126,364... 28 5.6
02_03_0386 + 18404641-18404673,18406366-18406558,18406688-184067... 28 7.5
>12_02_1184 + 26785739-26786113
Length = 124
Score = 31.9 bits (69), Expect = 0.46
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 79 MRCSYRKKIIYGVITILIFIIFSHPGLYGRSSY 177
M S+R+K++Y +++L+F++ LYG +Y
Sbjct: 31 MAVSFRRKVLYTAVSLLVFLVAGELLLYGVQNY 63
>09_02_0577 -
10862976-10863215,10863653-10863788,10863906-10864030,
10864132-10864516,10864571-10864798,10864976-10865319
Length = 485
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 91 YRKKIIYGVITILIFIIFSHPGLYG 165
+R+K+IY VI++ IF++ S LYG
Sbjct: 30 FREKVIYTVISLFIFLVCSQLPLYG 54
>09_02_0576 -
10853361-10853600,10854033-10854168,10854285-10854409,
10854487-10854871,10854934-10855161,10855332-10855675
Length = 485
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 91 YRKKIIYGVITILIFIIFSHPGLYG 165
+R+K+IY VI++ IF++ S LYG
Sbjct: 30 FREKVIYTVISLFIFLVCSQLPLYG 54
>03_02_0140 +
5864612-5864955,5865154-5865381,5865460-5865814,
5865899-5866023,5866150-5866285,5866382-5866621
Length = 475
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 91 YRKKIIYGVITILIFIIFSHPGLYG 165
+R+K+IY VI++ IF++ S LYG
Sbjct: 30 FREKVIYTVISLFIFLVCSQLPLYG 54
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 175 YEFIEKHNILKYLHEEVNVNLTSNAFTNCDYHDIINDETTLSPNLIEGDLV 327
+EFIEKHN+ +H++V VNL + + +I T+ PN + G L+
Sbjct: 589 FEFIEKHNLHDAIHDKV-VNLMI-LDSKRTVNLLIQHRDTIPPNEVVGQLL 637
>02_05_1183 +
34788219-34788533,34788733-34788930,34789010-34789359,
34789463-34789619
Length = 339
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 377 DQNLVQQSSYLIVTGQNNFVGSWYTCTRSFAANGYTI 487
DQ QQ + VTG F+GSW R GY +
Sbjct: 11 DQKRQQQQQLVCVTGAGGFIGSW--VVRELLLRGYRV 45
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 405 YDDCCTKFWSAVLWYIFTPVSDAMTL 328
YD+C K+ SA +W IFT + D L
Sbjct: 188 YDECLRKYGSANVWKIFTDLFDYFPL 213
>08_02_0043 -
11550185-11550418,11551525-11551568,11552134-11552185,
11552911-11553111,11553462-11553539,11553887-11554155,
11554241-11554300,11554433-11554547,11554651-11554710,
11554824-11555002,11555250-11555319,11555838-11555987,
11556108-11556287,11556366-11556449
Length = 591
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 271 DIINDETTLSPNLIEGDLVEGHGIRDGGEYIPQDCRPKFSTAI 399
D++ DE + + D+VE ++DGGE+ P P FS A+
Sbjct: 421 DLVKDEVSREIRRADQDIVESDQLQDGGEWPP----PWFSHAL 459
>01_07_0388 + 43236629-43237612
Length = 327
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 389 VQQSSYLIVTGQNNFVGSWYTCTRSFAANGYTI 487
+++ ++VTG N F+GSW R A GY +
Sbjct: 1 MEEERRVLVTGGNGFIGSW--IVRILLARGYAV 31
>04_04_0452 +
25342306-25342552,25342658-25342785,25342868-25343110,
25344530-25344782,25344916-25345151
Length = 368
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 374 ADQNLVQQSSYLIVTGQNNFVGSWYTCTRSFAANGYTIE 490
A + +VQQS LI G N+FV ++Y S + + I+
Sbjct: 153 AARQVVQQSLVLITLGGNDFVNNYYLVPFSVRSRQFAIQ 191
>03_02_0671 +
10315260-10315370,10315984-10316027,10316141-10316204,
10316278-10316392,10316504-10316571,10316917-10317014,
10317543-10317657,10318425-10318641,10319541-10319667,
10319803-10319857,10319997-10320093,10320748-10320876,
10320964-10321097,10321660-10321746,10321998-10322069,
10322320-10322359,10322535-10322779,10323587-10323764,
10323931-10324136,10324681-10324977
Length = 832
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 498 YEYSIVYPLAAKERVHVYQEPTKLFCPVTIRYDDCCTKFWSAVLWYIFTPVSD 340
YE+ I+ PL+A V E TKL V I +C + W F PV D
Sbjct: 131 YEFLIIAPLSASGVVLDDPESTKLLSSVAIALSNCGSN------WPAFVPVHD 177
>09_03_0045 - 11860245-11860450,11861539-11861725
Length = 130
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 151 PGLYGRSSYEFIEKHNILKYLHEEVNVNLTSNAFTNCDYHDIINDETTLSPNLIEGDLVE 330
P L+ R+ E +E ++ +H+++ N + + N D H DE+ +S N IE E
Sbjct: 30 PNLFERAKEE-VEA--LVGAVHDKMEHNSSPHG-NNADLHKDSKDESKVSMNKIETHKNE 85
Query: 331 GHGIRD 348
HG D
Sbjct: 86 THGTSD 91
>03_06_0673 - 35446537-35446629,35447001-35448548
Length = 546
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -2
Query: 227 LTSSCKYLSILCFSMNSYELLPYKPG*ENIIKISIVITPYIIFFL*EQRI 78
L S K+LS FS N P + K SI +TP FFL ++R+
Sbjct: 407 LVHSVKHLSEKYFSENGSSSRKENPASSPLDKFSIKLTPREAFFLKKRRV 456
>03_01_0473 -
3639533-3639598,3639848-3639955,3640037-3640126,
3640203-3640394,3640952-3641018,3641472-3641512,
3641762-3641779,3641984-3642055,3642154-3642237,
3642296-3642373,3642703-3642759,3643374-3643469
Length = 322
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 405 YDDCCTKFWSAVLWYIFTPVSDAMTL 328
YD+C K+ +A +W IFT + D L
Sbjct: 143 YDECLRKYGNANVWKIFTDLFDYFPL 168
>02_03_0386 +
18404641-18404673,18406366-18406558,18406688-18406773,
18407693-18407824,18407923-18408087,18409440-18409865
Length = 344
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 289 TTLSPNLIEGDLVEGHGIRDGGE 357
T L+P +E ++ +G GI+ GG+
Sbjct: 172 TVLTPGYVESEITKGKGIQSGGD 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,027
Number of Sequences: 37544
Number of extensions: 328574
Number of successful extensions: 859
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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