Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31793
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 420 PVTIRYDDCC 391
           P T++YD CC
Sbjct: 341 PATVQYDTCC 350


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 236 KFTLTSSCKYLSILCFSMNSYELLPY 159
           KFT  S    + I+C+ + SY   PY
Sbjct: 814 KFTSASDVWSMGIVCWEVMSYGERPY 839


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   IVNNKNEFDFVFFRIMHS 54
           +VNN   FD V FRIM++
Sbjct: 388 MVNNDFNFDDVNFRIMNA 405


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 1   IVNNKNEFDFVFFRIMHSITFR*NRKMRCS 90
           IVNN   FD V FRI+ +      +  RC+
Sbjct: 389 IVNNDFNFDEVNFRILGANVNNLIKNTRCA 418


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   IVNNKNEFDFVFFRIMHS 54
           +VNN   FD V FRIM++
Sbjct: 388 MVNNDFNFDDVNFRIMNA 405


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   IVNNKNEFDFVFFRIMHS 54
           +VNN   FD V FRIM++
Sbjct: 388 MVNNDFNFDDVNFRIMNA 405


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 102 NNIWSYNNTNFYN 140
           +NI +YNN N YN
Sbjct: 91  SNISNYNNNNNYN 103


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 102 NNIWSYNNTNFYN 140
           +NI +YNN N YN
Sbjct: 329 SNISNYNNNNNYN 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,409
Number of Sequences: 438
Number of extensions: 4590
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)