Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31779
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    81   6e-17
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   2.4  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   5.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   5.6  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   7.4  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    24   7.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   7.4  
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...    24   7.4  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    24   9.8  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    24   9.8  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    24   9.8  

>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 81.0 bits (191), Expect = 6e-17
 Identities = 42/111 (37%), Positives = 64/111 (57%)
 Frame = +1

Query: 58  ALEAQLQVRFITKQEQYAVPDSPYAIQCNVHPADLNTLINAILKETSPSFEKAVIFDFLV 237
           A   Q+QVRF T+ E  AV D+P  +  ++    L+ ++N +LK      EK   FDFLV
Sbjct: 6   APSGQVQVRFTTRNEDLAVGDTPIFVPTSLKRYGLSQIVNHLLKT-----EKPTPFDFLV 60

Query: 238 CGELLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQ 390
            G+LL  +L E++ + G+STE  L++EY++    P       HDDW+S +Q
Sbjct: 61  QGQLLKTTLDEYIVQNGLSTESILDIEYIQSTLPPAYLASFSHDDWISGIQ 111


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 228 FLSMWRVTLCLPRRALTRKRGID 296
           F+ +   T+C P R LT  RG+D
Sbjct: 450 FIQVANETMCRPIRKLTESRGLD 472


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 142 NVHPADLNTLINAILKETSPSFEKAVIFDFLVCGELLCASLAEHLQEKGV 291
           +VHP   N +  A       S EK  IF    CG L C++ A+ L++K V
Sbjct: 138 DVHPH--NNIACAKCGNELVSDEKKSIFA-AKCGHLFCSTCAKELRKKTV 184


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 331 TFPSIRPQACPLSIPLFLVSALRGRHKVTLHILRNQILPPSRTMVRSPSKL 179
           +FP + P       P    S L    +VT+H  +++  PPS  +   PS++
Sbjct: 394 SFPYVEPNVDRSKFPK---SPLNSSQEVTIHSSQDRQSPPSSPLKDVPSQI 441


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 313 VEYLERFPAPTPQDCLMHDDWVSAVQA 393
           ++Y +++ AP      MH D++ AV A
Sbjct: 520 IQYAQKYNAPLLYFFSMHKDYIEAVSA 546


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 115 PDSPYAIQCNVHPADLNTLINAI 183
           PD  +AI+C+V  A L++++  +
Sbjct: 220 PDCEFAIECHVTQASLSSVVPTV 242


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +1

Query: 106 YAVPDSPYAIQCNVHPADLNTLINAILKETSPSFEKAVIFDFLVCGELLCASLAEHLQEK 285
           YA  ++P+A   ++H    N+ I + LK      +   I  FL     L +SL + L   
Sbjct: 321 YACVEAPFAPFSDIHYWTCNSCIPSSLKILWKEVDYHCISSFLQSSNELASSLKKQLPSF 380

Query: 286 GVSTEDTL 309
              T  TL
Sbjct: 381 LAQTPLTL 388


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 257 AQSNSPHTKKSNITAFSN 204
           AQ+  P TK+SN   FSN
Sbjct: 139 AQNQMPKTKRSNAMPFSN 156


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 76  QVRFITKQEQYAVPDSPYAIQCN 144
           QV ++  Q+ + +  SP+ +QC+
Sbjct: 78  QVEYLPSQDYHNLESSPFKLQCD 100


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 200 GEVSFKIALIKVLRSAG 150
           GEV F +ALIKV+ + G
Sbjct: 212 GEVEFVLALIKVVATVG 228


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 247 LLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQA 393
           LL   +   L+E+G +T DT +   L R       +C+   D  + VQ+
Sbjct: 343 LLLNEIQPELEEQGYTTLDTQKYRVLSRQNGVVRSNCMDCLDRTNVVQS 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,234
Number of Sequences: 5004
Number of extensions: 30799
Number of successful extensions: 84
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)