Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31779
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1163 - 24439976-24440023,24440562-24440597,24440932-244410...    73   6e-14
11_06_0669 - 26084906-26087350                                         32   0.15 
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109...    30   0.78 
07_01_0939 + 7939716-7940220,7940675-7941564                           26   9.6  

>07_03_1163 -
           24439976-24440023,24440562-24440597,24440932-24441018,
           24441349-24441492,24441782-24441916,24442215-24442279,
           24442395-24442477,24442607-24442642,24443343-24443449,
           24443558-24443658,24443750-24443909
          Length = 333

 Score = 73.3 bits (172), Expect = 6e-14
 Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
 Frame = +1

Query: 70  QLQVRFITK-QEQYAVPDSPYAIQCNVHPADLNTLINAILKETSPSFEKAVIFDFLVCGE 246
           Q++VRF+TK       P +  A+  ++    L+ ++N++L   SP  + A  FDFLV GE
Sbjct: 12  QVRVRFLTKLPAPLRAPPTSIAVPADLTRMGLSEIVNSLLLAASPDHQ-AQPFDFLVDGE 70

Query: 247 LLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAV 387
           L+   L E L  KG+S E  LE+EY++       +D   HDDWVSAV
Sbjct: 71  LVRLPLQEFLLAKGISVERVLELEYVKAVAPRKQEDPCPHDDWVSAV 117


>11_06_0669 - 26084906-26087350
          Length = 814

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 73  LQVRFITKQEQYAVPDSPYAIQCNVHPADLNTLINAILKETSPSFEKAVIFDFLVCGELL 252
           L V+ IT    ++ P+S   ++   H     TLI  +L  T        + DF VCG+L+
Sbjct: 484 LSVKIITGSHVFSFPESIGQLRHLRHLCFRTTLIRQVLPNTIAKLRYMHVLDFGVCGDLV 543

Query: 253 CAS 261
             S
Sbjct: 544 FPS 546


>01_06_1472 -
           37609732-37609851,37609883-37610104,37610542-37610922,
           37612583-37612816,37613589-37613738,37613831-37614016,
           37615058-37615120
          Length = 451

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 269 SAREAQSNSPHTKKSNITAFSNDGEVSFKIALIKVLRSAGCTLH 138
           S  EA SNS    K++  A + + E+SF +  + ++ S GC  H
Sbjct: 314 SRNEAVSNSKLISKTDAQAPTVEDELSFLMHTLTLISSGGCRFH 357


>07_01_0939 + 7939716-7940220,7940675-7941564
          Length = 464

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 221 ITAFSNDGEVSFKIALIKVLRSAGCTLHWIA*GLSGTAYCSCLVINLTCN*ASKASPDI 45
           + A   DG ++  +AL   + ++GC    +A  +SG    +CLVI+     A KA+ ++
Sbjct: 78  LAAAPRDG-IAKIMALNAAIEASGCARDALASLMSGPERPACLVIDAALPGAQKAAAEL 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,325
Number of Sequences: 37544
Number of extensions: 205663
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)