Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31779
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-5|AAB37809.1|  439|Caenorhabditis elegans Temporarily ass...    61   3e-10
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    27   4.9  
U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily ass...    27   6.4  

>U80447-5|AAB37809.1|  439|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 345 protein.
          Length = 439

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
 Frame = +1

Query: 64  EAQLQVRFITKQEQYA-VPDSPYAIQCNVHPADLNTLINAILKETSPSFEKAVIFDFLVC 240
           +  +Q+ F +K E+   +PD+ + +       D+N L+N  ++    ++++   F+FLV 
Sbjct: 18  QKHVQITFFSKDEEIPQIPDAVFDVPTGAECDDMNLLLNKTIEANDGAWKERR-FEFLVG 76

Query: 241 GELLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQ 390
              L  SLAE ++E  V TE  L+VE +    AP P   +   DWVS+VQ
Sbjct: 77  ETFLRTSLAEFIEEYEVETETILKVECVIGIEAPKPLHDIQAPDWVSSVQ 126


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 187 KETSPSFEKAVIFDFLVCGELLCASLAEHLQEKGVSTED 303
           ++ +PSF K V F F    E++   LAE L+   +S +D
Sbjct: 37  EQVNPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKD 75


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 175 NAILKETSPSFEKAVIFDFLVCGELLCASLAEHLQEKGVSTEDTLEVEYLE 327
           N +   T+P      +F FL+C  LL  SL  HL       ++ L +E+ E
Sbjct: 211 NRVNTRTTPLIYIPTVFAFLICHFLLVRSL--HLDGAIEGVQEMLRIEWAE 259


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
            protein.
          Length = 2427

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 388  EQLTPNHRALNSPVELVQGTFPSIRPQA 305
            E L   HRAL S +E  +GT   +R QA
Sbjct: 943  EALLKKHRALLSDLEAFKGTIEDLRKQA 970


>U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 127 protein.
          Length = 862

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 163 NTLINAILKETSPSFEKAVIFDFLVCGELLCASLAEHL 276
           N L+ A+LK T+   E+ +I + + C E   A L + L
Sbjct: 287 NLLLKAVLKVTTDENEREMISNLVDCAESATAQLNKEL 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,314
Number of Sequences: 27780
Number of extensions: 177632
Number of successful extensions: 426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)