Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31776
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   4.1  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   4.1  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   5.4  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    26   5.4  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 233 FMRYTITKFPDFYARKTCVTKVS 165
           F+ Y + K+PDF+   TC+ K+S
Sbjct: 25  FLDYAVDKYPDFHF--TCIDKLS 45


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 303 KYYYYYFTNCIKFNQIKVIKEDRRLECS 386
           K  YYY+  C K+N    +K++  L C+
Sbjct: 70  KLLYYYWEVCPKYNNDGTMKQEMILACN 97


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 449 KFLPVFVYIVFFPPGRKMAPFVPLR*TKL 535
           KF+ +F + + FPP   +A F+P+  TK+
Sbjct: 384 KFMFLFTFGIVFPPLWILASFLPIPRTKI 412


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 242 HGFFMRYTITKFPDFYARKTCV---TKVSDSV 156
           H F++R+++  +  +    TC+   TKV DSV
Sbjct: 73  HRFYLRFSLKNYHYYEVAATCIFLATKVEDSV 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,440
Number of Sequences: 5004
Number of extensions: 48097
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)