Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31776
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 30 1.8
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 30 1.8
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853... 30 1.8
03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595... 29 2.4
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 29 3.2
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 27 9.7
04_01_0573 + 7436146-7436701,7436786-7437204 27 9.7
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 27 9.7
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 570 YSPWKVKSKPQITCNCWP 623
Y P + + +P++TC+CWP
Sbjct: 597 YDPPRPEKRPKMTCDCWP 614
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 570 YSPWKVKSKPQITCNCWPR 626
Y K K P TCNCWP+
Sbjct: 681 YDAPKTKKPPSRTCNCWPK 699
>07_01_1006 +
8528508-8529285,8529376-8529544,8530179-8530445,
8530533-8530878,8530964-8531101,8531197-8531322,
8531422-8531634,8531721-8531863,8531891-8532009,
8532099-8532295,8532379-8532729,8532811-8533395
Length = 1143
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 570 YSPWKVKSKPQITCNCWPR 626
Y K K P TCNCWP+
Sbjct: 708 YDAPKTKKPPSRTCNCWPK 726
>03_02_0640 -
10058828-10058971,10059066-10059201,10059512-10059590,
10060861-10060927,10061014-10061100,10061474-10061567,
10061663-10061749,10062267-10062328,10062485-10062584,
10062729-10062827,10062969-10063033,10063617-10063694,
10063787-10063873,10064383-10064466,10064860-10064955,
10065045-10065122,10066049-10066139,10066224-10066315,
10066433-10066560,10067421-10067495,10067670-10067850
Length = 669
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 481 FPSRAENGTFRPAALNKVAALRLCRTKKLYTALGK*KVNLRSHVIV 618
F NG+ RP + + AA CR K+Y G ++ S+V+V
Sbjct: 46 FAVSRSNGSLRPLSAEEAAAGSDCRVSKIYGVAGVIRLLAGSYVLV 91
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 570 YSPWKVKSKPQITCNCWPR 626
Y K K P TCNCWP+
Sbjct: 647 YDAPKSKKPPSRTCNCWPK 665
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 561 KIVYSPWKVKSKPQITCNCWPRRSL 635
+ YS + KP+ TCN WPRR++
Sbjct: 320 RATYSAYNHGRKPR-TCNWWPRRAI 343
>04_01_0573 + 7436146-7436701,7436786-7437204
Length = 324
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 501 WHLSSRCAKQSCRFAPLSDKKIVYSPWKVKSKPQITCNCW 620
W+LS + + A L ++K+ S WK K + ++ W
Sbjct: 43 WNLSRNVVEATSSRAILGERKLCLSIWKTKVQAKVKIFAW 82
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 239 GFFMRYTITKFPDFYARKTCVTKVSDSVLS 150
G FM Y T D + K C++K D++ S
Sbjct: 426 GMFMAYLSTPCTDAFTGKKCISKAIDALFS 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,640,553
Number of Sequences: 37544
Number of extensions: 270523
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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