Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31775
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 29 0.67
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 28 0.88
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 27 1.5
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 27 2.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 27 2.7
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 3.5
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 3.5
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.5
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 26 4.7
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 26 4.7
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 6.2
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 6.2
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 25 6.2
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 6.2
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 25 8.2
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 8.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.2
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 28.7 bits (61), Expect = 0.67
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +1
Query: 226 GQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEF 366
G ++K E+ ++++F P + + +++F + DA +G ID +EF
Sbjct: 41 GHLNKSEFQKIYKQFF--PFGDPSAFAEYVFNVFDADKNGYIDFKEF 85
Score = 26.6 bits (56), Expect = 2.7
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Frame = +1
Query: 40 HVFTAFFDTNGSGTIDKKDFELAIERISKSRGWSAGDAXYKEVQDTLLXVWDGLSSADTD 219
+VF F D + +G ID K+F A+ SRG E+ D L +W D D
Sbjct: 67 YVFNVF-DADKNGYIDFKEFICALS--VTSRG---------ELNDKL--IW-AFQLYDLD 111
Query: 220 NDGQVSKEEWI----SLWEKFSS-----SPSDWQNLYCKFIFQLEDASNDGSIDSEEF 366
N+G +S +E + ++++ S D IF + D + DG + EEF
Sbjct: 112 NNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 337 NDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSS--VSFAEFXELFKEYFASEDVNA 510
+ + ++ + S DK E ++ K S ++ +EF +++K++F D +A
Sbjct: 4 SQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSA 63
Query: 511 PGNFVF 528
+VF
Sbjct: 64 FAEYVF 69
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 0.88
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +1
Query: 214 TDNDGQVSKEEWISLWE---KFSSSPSDWQNLY 303
T+ DG EE+ ++ KF++ P+ WQN Y
Sbjct: 240 TEEDGDEKDEEYSDIFSIKGKFNTRPNAWQNAY 272
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +1
Query: 169 QDTLLXVWDGLSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGS 348
+D LL + L + + EEWI LW+ S + W + + F+L + G
Sbjct: 76 KDGLLYAYYELCQEKFEKCLKEDDEEWIELWDLESRT---WDLIQRLYSFRLSE--QQGH 130
Query: 349 IDSEEFSS 372
I S FSS
Sbjct: 131 IQSHAFSS 138
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 202 SSADTDNDGQVSKEEWISLWEKFS-SSPS 285
SS DTD+DGQ+ EE K S SSPS
Sbjct: 245 SSEDTDSDGQMEDEEKSDSVHKSSFSSPS 273
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 221 TTAKSPKKSGFPSGRSFPAAPVTGRI 298
T AK+P K+ P+G+ P++P T +
Sbjct: 278 TFAKNPTKNSKPAGQVIPSSPFTSTL 303
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 41 TFSPLSSTPMAAEPLIKRTLNLPLKGYPNREAGVL 145
TF+ SS P + P +R +++ ++ PN + G++
Sbjct: 876 TFTVESSQPFSLSPGERREIHIKIRAKPNSQEGLI 910
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 140 LQPLDLDILSMASSKSFLSMVPLPLVSKKAVKTC 39
L LDL I S+ + SF +P P ++++ C
Sbjct: 201 LPQLDLSISSLYTLPSFFPQLPTPSFHRRSINLC 234
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 217 DNDGQVSKEEWISLWEKFSSSPSDWQN 297
DND Q + W S+ F+ P ++ N
Sbjct: 253 DNDSQTRRSSWSSIASAFNDFPEEFPN 279
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +2
Query: 215 PITTAKSPKKSGFPSGRSFPAA---PVTGRIYTASLYFNLRMLVMTGPSTARNSLRS 376
PI+ S G P S +A V AS FNL V P ARNS+ S
Sbjct: 57 PISHVPSVGTRGIPRSYSMASAYPYQVNSNSMDASTAFNLNQDVADKPMLARNSIDS 113
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -2
Query: 171 LNFFVXSISSTPASRFGYPFNGKFKVLFINGSAAIGVEESGENVQQLLL 25
LN + +IS AS+ YP K LFI GS V S V +LL
Sbjct: 36 LNVKLENISVVDASK--YPHMAAVKDLFIRGSVVRYVHMSSAYVDTILL 82
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 421 QKLSKGKSSVSFAEFXELFKEYFASEDVNAP 513
+++ KGK+S S E ++FKEY + ++ P
Sbjct: 682 ERVMKGKTSPS--EMFKMFKEYLSFDEAGLP 710
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 308 LQYKFCQSLGLLENFSQREIHSSLETWPSLSVSALLNPSQTFKSV 174
L ++FC SLGLL + Q +++ PS+ + L +P F +
Sbjct: 257 LYHEFCYSLGLLLSVDQLKLY----LLPSIEKALLRSPEIIFSGI 297
>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 73
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 296 FCQSLGLLENFSQREIHSS--LETWPSLSVSALLNPSQTF 183
+C S+ LE S R SS L SLS+ NPSQTF
Sbjct: 26 YCVSIYRLEECSGRFKPSSYSLHLLKSLSIIICENPSQTF 65
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 211 DTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSID 354
D +N Q KEEW + + + +PS + + + QL+D S +I+
Sbjct: 137 DFNNKDQFWKEEWSTEQYEIAENPSGYASA-LHTLTQLDDGSETNAIN 183
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 400 AEAASAFQKLSKGKSSVSFAEFXELFKEYFASEDVNAPGNFVFGKTSF 543
A A A++ L KG+ +S+ + E F+S VNA + + G F
Sbjct: 311 AALAEAYEYLEKGEYQLSYDKAKESCLGSFSSPSVNARTHNLVGTFKF 358
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 25.0 bits (52), Expect = 8.2
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = -2
Query: 234 DLAVVIGVSAAQPIPDXQKRVLNFFVXSISSTPASRFGYPFNGKFKVLFINGSAAIGV 61
D V IG+ A +P P + NF+ + S R PF GK F IGV
Sbjct: 179 DTLVSIGL-ATKPYPPFRLPGWNFWSTAYVSDGTRRSNSPFTGKPYSSFYQQGDVIGV 235
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 109 IERISKSRGWSAGDAXYKE-VQDTLLXVWDGLSS 207
++ I+K+RG SAGD+ + V + LL DG++S
Sbjct: 599 LDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNS 632
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 8.2
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 232 VSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAA 411
+S EE +S + SS D +N + L+D S S E+ S+ +S E A
Sbjct: 1421 ISLEESLSNQRQKESSLLDAKN---ELEHMLDDTSRKNSSLMEKIESINSSLDDKSFELA 1477
Query: 412 SAFQKL 429
SA +KL
Sbjct: 1478 SAVEKL 1483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,199
Number of Sequences: 5004
Number of extensions: 47046
Number of successful extensions: 178
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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