Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31770
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   5.0  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    25   5.0  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   8.8  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 138 HPWWGA*SDFRHGSDALF 85
           +P+W   SDF H S+AL+
Sbjct: 658 YPYWHRNSDFSHISEALY 675


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/65 (21%), Positives = 25/65 (38%)
 Frame = +3

Query: 96  RYHGESHFKPPTMGELPVPKGSWQSHHDANQRRFNAVLLFGIXXXXXXXXXXKTSGLVYL 275
           R+  +S F+  T        GS     +   +  N++    +          K SG++YL
Sbjct: 67  RFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYL 126

Query: 276 NYSPP 290
           +  PP
Sbjct: 127 SRIPP 131


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 94  VATMAKVTSSPPPWVNYQCPKAHGSRTMMP 183
           + +  K  +SP PW N Q   + G     P
Sbjct: 147 IESRKKRKNSPDPWANLQTKPSFGETVQAP 176


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 12   KLTTQXSATIKMFVTRQIASRFFQQTVRRYH 104
            KL    ++ + +F+T  + +R F +++  YH
Sbjct: 1334 KLVAWATSIVNVFITPLVKARTFPESLTTYH 1364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,727
Number of Sequences: 5004
Number of extensions: 22768
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)