Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31766
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   1.1  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.4  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    24   4.5  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    23   7.9  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    23   7.9  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    23   7.9  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    23   7.9  

>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 19  VHGTYQTFVHAF--QTAERIREDHPDEDWF 102
           +HGTY  +      +TA    E H DE WF
Sbjct: 105 LHGTYNNYKQDLYARTARSFVESHCDEAWF 134


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 190 VGCKWADSIVYGPESFKDNPDTYNPKYNTK 279
           VG K+ D I Y     ++  DT++PKY+T+
Sbjct: 54  VGGKY-DGIKYFDHHQREFNDTFSPKYSTR 82


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 40  FVHAFQTAERIREDHPDEDW 99
           F H+F T +    D PD+DW
Sbjct: 155 FPHSFPTWKSAFRDVPDKDW 174


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 100 TSPHQGDPL*SFQRSGKRARMFGRYRVRGTDS 5
           TSP Q DPL S   S   +R     R  G D+
Sbjct: 5   TSPGQADPLESENESSLTSRFLPNKRDGGKDN 36


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 94  DWFHLTGLIHDLXKVMAFYDEP 159
           DW +  GLI  L ++++ Y +P
Sbjct: 196 DWLYSQGLIQSLLRLLSPYVDP 217


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 16  PVHGTYQTFVHAFQTAERIREDHPD 90
           P+H   +T ++AF+T ER +  H D
Sbjct: 347 PLHA--ETCINAFRTQERKQNSHDD 369


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 28  TYQTFVHAFQ-TAERIREDHPDEDWFHLTGLIHDLXKVMAFYDEPQWCVVGDTF 186
           ++  F+H F+   E     + D +   L+  IH L K   FY+ P   +V +++
Sbjct: 83  SFYEFMHEFEFDPENSISLNYDSETKDLSIFIHGLWKNTIFYEIPLLALVSESY 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,169
Number of Sequences: 5004
Number of extensions: 24919
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)