Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31766
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323... 115 7e-27
11_06_0437 - 23533218-23536382 29 0.56
04_03_0499 - 16581343-16581469,16581563-16581676,16581896-165819... 29 0.98
10_02_0089 - 5138048-5138561,5138864-5139105,5139712-5140079,514... 28 1.7
11_06_0707 + 26467214-26470309 26 5.2
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110... 26 5.2
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840... 26 5.2
11_06_0698 + 26385989-26389090 26 6.9
05_04_0244 - 19344418-19344483,19344961-19345029,19345355-193454... 26 6.9
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 26 6.9
02_05_0135 - 26165263-26165284,26165400-26165458,26165506-261657... 25 9.2
>06_03_0471 +
21130839-21130869,21131013-21131127,21132228-21132309,
21132444-21132648,21133237-21133296,21133420-21133472,
21133589-21133711,21133844-21133913,21134012-21134090,
21134172-21134253,21134272-21134310
Length = 312
Score = 115 bits (277), Expect = 7e-27
Identities = 54/90 (60%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Frame = +1
Query: 46 HAFQTAERIREDHPDEDWFHLTGLIHDLXKVM---AFYDEPQWCVVGDTFPVGCKWADSI 216
H QTAE IR+D PDEDW HLTGLIHDL KV+ +F + PQW VVGDTFPVGC + +
Sbjct: 119 HLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTFPVGCAFDECN 178
Query: 217 VYGPESFKDNPDTYNPKYNTKYGMYKPHCG 306
V+ + FK+NPD NPK NTK+G Y CG
Sbjct: 179 VHF-KYFKENPDYLNPKLNTKFGAYSEGCG 207
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 29.5 bits (63), Expect = 0.56
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 85 PDEDWF-HLTGLIHDLXKVMAFYDEPQWCVVGD 180
PD F H+ IHDL + +AF+ Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537
>04_03_0499 -
16581343-16581469,16581563-16581676,16581896-16581931,
16582964-16583013,16583633-16583705,16583883-16584078,
16584154-16584445
Length = 295
Score = 28.7 bits (61), Expect = 0.98
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 59 PLKGSERITLMRTGSTLLASFMIXAR*WHFMT-SRSGAWSETLSPLVVNGLTLSCMVPRA 235
P K + + G LL++ M AR F+ S A LSPL ++ + CMVP A
Sbjct: 46 PSKADQSASAAAAGGVLLSAEMPPARQLEFLLRSFERAAKMRLSPLELDAYSEGCMVPLA 105
>10_02_0089 -
5138048-5138561,5138864-5139105,5139712-5140079,
5140862-5140943
Length = 401
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 34 QTFVHAFQTAERIREDHPDE-DWFH 105
+ F+H F + IR +PDE DWF+
Sbjct: 65 EIFMHRFLLSSAIRTSNPDEADWFY 89
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 85 PDEDWF-HLTGLIHDLXKVMAFYDEPQWCVVGDTFPVG 195
PD +F H + +HDL + +A Y + C VGD +G
Sbjct: 478 PDGLYFDHWSCKMHDLLRQLACYLSREECFVGDVESLG 515
>10_01_0089 +
1103841-1104152,1104809-1104946,1105527-1105631,
1106403-1106577,1107124-1107398,1108222-1108391,
1108508-1109084
Length = 583
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +2
Query: 23 TVPTKHSCT--LSRPLKGSERITLMRTGSTLLASFMIXAR*WHFMTSRSGAWSETLSP-- 190
++P C + RP+ + R + GS LLA + A M + G + + P
Sbjct: 3 SMPEGRKCVGCIGRPVADARRRARLGKGSRLLARLLAPAEVRQVMRAERGCAANQVRPGE 62
Query: 191 LVVNGLTLS 217
++VNG LS
Sbjct: 63 ILVNGRGLS 71
>05_07_0285 +
28982502-28982782,28982888-28982989,28983189-28984006,
28984594-28985050,28985203-28985242
Length = 565
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Frame = +1
Query: 19 VHGTYQTF----VHAFQTAERIRED 81
VH + TF VHAFQT E + ED
Sbjct: 209 VHSVFSTFAHSLVHAFQTFEEVWED 233
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 85 PDEDWF-HLTGLIHDLXKVMAFYDEPQWCVVGDTFPVG 195
PD +F H + +HDL + +A Y + C VGD +G
Sbjct: 478 PDGLYFDHSSCKMHDLLRQLASYLSREECFVGDPESLG 515
>05_04_0244 -
19344418-19344483,19344961-19345029,19345355-19345420,
19345735-19345785,19345892-19346057,19346148-19346263
Length = 177
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 2 VRVSTPY-TVPTKHSCTLSRPLKG 70
+R T Y T P K+ C + RP KG
Sbjct: 59 IREGTGYVTFPVKYQCVVFRPFKG 82
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 41 SCTLSRPLKGSERITLMRTGSTLLASFMIXAR*WHFMTSRSGAWSETLSPLVVNGLTLSC 220
SCT R L S ++ ++ +L F + F R+ +W LS L + LSC
Sbjct: 1044 SCTSIRNLNSSLKVLKIKN-CPVLKVFPLFEICQKFEIERTSSWLPHLSKLTIYNCPLSC 1102
Query: 221 M 223
+
Sbjct: 1103 V 1103
>02_05_0135 -
26165263-26165284,26165400-26165458,26165506-26165721,
26166309-26166362,26167029-26167123,26167220-26167317,
26167413-26167555,26167900-26168031,26168695-26168823,
26169370-26169831
Length = 469
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +1
Query: 169 VVGDTFPVGCKWADSIVYGPESFKDNPDTYNPKYNTKY 282
V G+ P GC W D I+ + N + K + Y
Sbjct: 390 VAGEDAPFGCPWTDPIIMEFLEYVHNEKNSSTKGSISY 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,072,530
Number of Sequences: 37544
Number of extensions: 177681
Number of successful extensions: 344
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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