Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31763
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    30   0.12 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    28   0.50 
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    28   0.50 
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   6.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   6.1  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   6.1  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    25   6.1  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   8.1  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 356 NVVPCGPSGHYRTCNRYSAFQNLLICETFSSRSVYHVC 243
           ++  CG   HY   N+  + +  L+CE+  +R V+H+C
Sbjct: 703 SIAACGAVHHYLVQNKLRS-RVALVCESGDAREVHHMC 739


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 306 QRVSEFAHL*NFLQSIRLSCLWRLVVSLDNGKQFLLISIYPALLHLERHLW 154
           ++  +F  L N L   RLS  WR++VS  N +  + I   P L   ++ +W
Sbjct: 461 EKAKDFLELENSLSINRLSISWRIMVS--NFEPAIFIQHTPTLHGTDKSVW 509


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 120 YLDEVLNEILAAKGVVPDAKERDRLILA 203
           YLDEV NE++   G   DAKE DR +LA
Sbjct: 78  YLDEVKNELVEDGGF--DAKEVDRELLA 103


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 ERDRLILAEIAFHCLKKRPNATNMINGSTGES 275
           ER+R IL  ++  C     +++N  N STG S
Sbjct: 406 EREREILVRLSKRCCASSSSSSNSNNLSTGMS 437


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 144 FHLTLHLDTVEKRLASLLKQC 82
           +H+T+H+ + E+R+  +L  C
Sbjct: 383 YHITIHVSSYERRVEFMLAVC 403


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 237 NATNMINGSTGESFTNEQILKRAVSIARSIMARGAAGNNIMVVMRN 374
           N TN++  STG   T +Q    +++        G    N +V+MR+
Sbjct: 252 NITNVLTNSTGHYCTTQQEDNASLTALTRASFDGLVNINRVVIMRS 297


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 126 DEVLNEILAAKGVVPDAKERDRLILAEIAFHCLKKRPNATNMINGSTGESF 278
           DEVL  I  AK  +PD+++   L L  +       R        G+  E+F
Sbjct: 206 DEVLKSIRDAKSSLPDSQDGPFLSLQGMTRQLRNFRLRVLEEFQGAAAENF 256


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 ETTKRHKHDKRIDWRKFHK 283
           +  K+H+  +RIDW K  K
Sbjct: 342 DAIKKHRIYRRIDWNKLEK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,656
Number of Sequences: 5004
Number of extensions: 35040
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)