Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31763
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   9.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    20   9.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 192 LILAEIAFHCLKKRPNATNMINGSTGESFTNEQILKRAVSIARSIMARGAAG 347
           LIL   +  C KK+P+  + +    GE  T   +   AV +A +  A GA G
Sbjct: 554 LILRRASDECNKKQPSDCDTLEYRNGEVTT--PLFTPAVGVA-AASAGGAGG 602


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 180 LLHLERHLWPLIFHLTLHL 124
           LLHL  H +P +    LHL
Sbjct: 131 LLHLAMHDYPPLVSGALHL 149


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 81  HTVLRGKPNASQLYLDEVLN 140
           H  + G P+A +LY D + N
Sbjct: 20  HGAVAGNPDAKRLYDDLLSN 39


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 81  HTVLRGKPNASQLYLDEVLN 140
           H  + G P+A +LY D + N
Sbjct: 20  HGAVAGNPDAKRLYDDLLSN 39


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 199 NINLSRSFASGTTPL 155
           N++  RS  +GTTPL
Sbjct: 247 NVSSRRSDMNGTTPL 261


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 180 LLHLERHLWPLIFHLTLHL 124
           LLHL  H +P +    LHL
Sbjct: 99  LLHLAMHDYPPLVSGALHL 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,079
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)