Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31760
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   1.8  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    25   4.1  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   4.1  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    25   4.1  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   5.4  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   5.4  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    25   7.1  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   7.1  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   7.1  

>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 168 SSFFKYFETMTVQAPQPPSPHPYLVP 91
           S  + + +  T Q PQP  P+PY  P
Sbjct: 101 SGQYNWNQAQTAQPPQPVQPNPYGAP 126


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 263 QDRLHPVQERIAKSHGSQCGFCTPGIVMSMYAL 361
           Q R HPV +  A    ++  F TPG+ M   AL
Sbjct: 247 QTRKHPVTDNGATGLFTEYQFFTPGLYMGYLAL 279


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 314 VIREILQFSLGQDVIDLVWNRY 249
           V R +L   +G+D ID +W+ Y
Sbjct: 827 VERAVLNLPVGEDAIDGIWSSY 848


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 227 LAVTTVXGIGSTQDRLHPVQERIAKSHGSQCGFCTPGIVMSMYA 358
           +A++ + G+  T+DR+    + I ++ G  CG  +   + S  A
Sbjct: 140 VAISCIKGVSVTKDRVRLFSDIIEENTGMYCGVLSGANIASEVA 183


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 432 VHLHKLPCKAPSISSYAI 379
           + LH L CK PSI+S+ +
Sbjct: 735 IELHNLCCKFPSINSFQL 752


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +2

Query: 173 INHIAVNACLISVCAM-----HGLAVTTVXGIGSTQDRLHPVQERIAKS 304
           I H+  +AC IS+  M     +GL  T    +   ++ LHPV +  A S
Sbjct: 476 IYHVDASACSISISLMDIAKTYGLTNTGKSSLSVGRNSLHPVDDLKALS 524


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 148 EILKK*RSDKSHRG*CVPDICMCNAWVSSHNRXRYRFHTRSITSCPRENCKISRITMRLL 327
           +I+KK + D+ HR  C      C    ++  R  YR HT  +T   R    + R T + L
Sbjct: 9   DIIKKPKLDQ-HRSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQRYQKGLYRPTKKEL 67


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 252 IPXTVVTANPCIAHTDIRHALT 187
           +P   +T  P  + +DI+HA T
Sbjct: 447 VPSAYITLTPTFSFSDIKHAFT 468


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 437 IPCIYINCLVKHPQYLHML 381
           IP IY NCL +HP  + ML
Sbjct: 366 IPFIY-NCLQRHPTCMQML 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,894
Number of Sequences: 5004
Number of extensions: 35497
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)