Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31753
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...   126   1e-30
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    63   1e-11
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    62   3e-11
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    59   2e-10
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    56   1e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    56   2e-09
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    48   4e-07
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    47   1e-06
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    29   0.29 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   4.8  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    24   6.3  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    24   6.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   8.3  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   8.3  

>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score =  126 bits (304), Expect = 1e-30
 Identities = 65/107 (60%), Positives = 78/107 (72%)
 Frame = +3

Query: 42  ISLLNPKAEFARAAQALAVNISAAKGIEDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 221
           +SLLNPKAE  + AQAL VNISAA G++DV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2   LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61

Query: 222 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFI 362
           L EMQIQ+PTAS IA+                 LL+GELLKQA+++I
Sbjct: 62  LTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYI 108


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 62.9 bits (146), Expect = 1e-11
 Identities = 30/92 (32%), Positives = 53/92 (57%)
 Frame = +3

Query: 87  ALAVNISAAKGIEDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 266
           A+  +I A K + ++++T+LGP+G  K+L+S  G+I +T DG  +L +M+++H  A L+ 
Sbjct: 35  AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLV 94

Query: 267 RXXXXXXXXXXXXXXXXVLLIGELLKQADIFI 362
           +                V+L G LL+QA+  I
Sbjct: 95  QLSKSQDDEIGDGTTGVVVLAGALLEQAEALI 126


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 62.1 bits (144), Expect = 3e-11
 Identities = 28/84 (33%), Positives = 45/84 (53%)
 Frame = +3

Query: 99  NISAAKGIEDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 278
           NI AAK + DV++T LGP+  +KML+   G + +T DG+ +L E+++ HP A  +     
Sbjct: 24  NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELAR 83

Query: 279 XXXXXXXXXXXXXVLLIGELLKQA 350
                        ++L GE+L  A
Sbjct: 84  TQDEEVGDGTTSVIILAGEILAAA 107


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 59.3 bits (137), Expect = 2e-10
 Identities = 27/85 (31%), Positives = 45/85 (52%)
 Frame = +3

Query: 99  NISAAKGIEDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 278
           NI AA+ + D ++T+LGPKG  KM+ +G G++ +T DG  +L  + + HP A ++     
Sbjct: 24  NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSA 83

Query: 279 XXXXXXXXXXXXXVLLIGELLKQAD 353
                        V+L G +L  A+
Sbjct: 84  AQDVEAGDGTTSVVILAGSMLACAE 108


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 26/85 (30%), Positives = 44/85 (51%)
 Frame = +3

Query: 99  NISAAKGIEDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 278
           N+ A   I +V+K++LGP G  KMLV   GD+ +T DG  +L  + ++HP   ++     
Sbjct: 26  NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQ 85

Query: 279 XXXXXXXXXXXXXVLLIGELLKQAD 353
                        V++  ELL++A+
Sbjct: 86  QQDKEVGDGTTSVVIIAAELLRRAN 110


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 56.0 bits (129), Expect = 2e-09
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = +3

Query: 90  LAVNISAAKGIEDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 269
           L  NI+A   ++D ++T LGP G  K++V   G++ I+ DG  ++  + I HP A  +  
Sbjct: 26  LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVD 85

Query: 270 XXXXXXXXXXXXXXXXVLLIGELLKQADIFI 362
                           V+  GELL++A  F+
Sbjct: 86  IARAQDAEVGDGTTSVVVFAGELLREARTFV 116


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 48.0 bits (109), Expect = 4e-07
 Identities = 24/92 (26%), Positives = 45/92 (48%)
 Frame = +3

Query: 87  ALAVNISAAKGIEDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 266
           A+  N +A + + ++ +T+LGP G  K++V+      +T D   ++ E+++ HP A L+ 
Sbjct: 27  AVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVV 86

Query: 267 RXXXXXXXXXXXXXXXXVLLIGELLKQADIFI 362
                            V+  GELL +A+  I
Sbjct: 87  DATQQQENELGDAANFVVVFTGELLAKAENMI 118


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = +3

Query: 75  RAAQALAVNISAAKGIEDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLLHEMQIQHPT 251
           R   A   +   A  + D++K+ LGPKG  K+L S + GDI +T DG  +L  + + +  
Sbjct: 17  RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAA 76

Query: 252 ASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFI 362
           A ++                   +   ELL+QA+I +
Sbjct: 77  AKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMV 113


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 132 MKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 269
           +   LGPKG   ++    G  KITKDG  +   + ++    +L AR
Sbjct: 58  VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGAR 103


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 203 GDLYVPSTRNQHFHRAFRTKVSFHYIFNSFSC 108
           G  +  S RN+ FHR F+      ++ + + C
Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 223 NKTLPSLVIFMSPAPETNIFIVPFGPRLVFITSS 122
           N  L  L + M P P  + F+V F P     +SS
Sbjct: 247 NSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSS 280


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 152 ERHDENVGFWCWGHKDHQ 205
           ER  E +G W  GH+ H+
Sbjct: 375 ERLQEAIGLWSKGHESHK 392


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 241 WICISCNKTLPSLVIFMSPAPETNIF 164
           W+ ++ +KT+  + +F S  P   IF
Sbjct: 507 WVTVTLDKTIVPIKLFASEDPYAEIF 532


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 30  EMAAISLLNPKAEFARAAQALAVNISAAKGIEDVMKTNLGPKGT 161
           E A ISL+   ++ +       +N S+   + D+  TN+ PK T
Sbjct: 149 EDAVISLVEADSQESDTESLPEINDSSDVSLSDLPSTNVTPKKT 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,571
Number of Sequences: 5004
Number of extensions: 25470
Number of successful extensions: 61
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)