Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31744
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   4.2  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   5.5  

>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 154 CKSTVVVNLFTCYIHLLCC 210
           C S  ++ + TC  HL+CC
Sbjct: 36  CPSMELIAILTCSNHLICC 54


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -3

Query: 392 LKVNHQDTQFTKSIDSVLGNTEIN*LSARYFI*SVGNVKVLLRGLTKRLN 243
           L+ +  D  FT+SI + + NT+++ L       S+ +   LL  +TK++N
Sbjct: 425 LEESSYDESFTESIRTAVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQIN 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,759
Number of Sequences: 5004
Number of extensions: 33928
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)