Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31744
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0864 - 7185070-7185141,7185274-7185402,7185585-7185695,718...    29   2.4  
01_01_0433 + 3282195-3285185                                           27   7.4  
01_06_1749 - 39636951-39638102                                         27   9.8  

>07_01_0864 -
           7185070-7185141,7185274-7185402,7185585-7185695,
           7186114-7186292,7186479-7186576,7186691-7186956,
           7187895-7188050,7188131-7188319,7188711-7188824,
           7189131-7189273,7189683-7189818,7189954-7190058
          Length = 565

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 28  RSQV*LQRLPHPSNRNAL-LLHSRNGXGGGTYPR-GTLKRSYHQCKSTVVVNLFTCY 192
           RS + L R PHP++   L LL    G GGG+ PR G   R+  +    V + +F  Y
Sbjct: 13  RSPLVLHRHPHPAHHRRLRLLPLVAGGGGGSPPRVGRRIRASREKGRRVGIRVFARY 69


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = +1

Query: 127 GTLKRSYHQCKSTVVVNL--------FTCYIHLLCC*FKQN*SVIVRFNRFVSPRNKTL 279
           GTL +S   CK+ VV+N+        F C++HLL     +   ++++ N+F  P   TL
Sbjct: 697 GTLPKSLVTCKNLVVLNVANNQIGGSFPCWMHLL----PKLQVLVLKSNKFYGPLGPTL 751


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 33  SSIVTTATPPFKPKRITA 86
           SS+ + A PPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,121,353
Number of Sequences: 37544
Number of extensions: 203891
Number of successful extensions: 388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)