Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31742
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   2.0  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   2.0  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    24   6.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    24   8.0  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    24   8.0  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    24   8.0  
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    24   8.0  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 124 LHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKP 225
           LH GKLS  ++    D  Y  +  S   PL  +P
Sbjct: 683 LHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEP 716


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 91  QTSLLNLVSHKAKGCRYYYFI 29
           Q   LNL S+K  GCR +Y I
Sbjct: 380 QLCSLNLASNKITGCRTFYHI 400


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 69  TKFNRDVCDYENCSSSLESSFREVKFC-FP 155
           TKFN +   Y+N SS+L++     KF  FP
Sbjct: 164 TKFNFEKKGYQNLSSALDTILHIKKFSKFP 193


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +1

Query: 139  LSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFEKCLKSGKFCQK 288
            L S   S   DR+ +     +    +  PE    +  F   L  GK+C+K
Sbjct: 859  LESLLQSGSQDRAIYDALAKIYIDSNNNPEVFLKENNFYDTLTVGKYCEK 908


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 223 PEYSTAKEAFEKC 261
           P+Y+T+KE FE C
Sbjct: 509 PKYNTSKEHFEAC 521


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 22  NNE*NSNNDIPLLCVKLNLTGMSVITK 102
           NN   SN+++ +L V  N++ +SV+TK
Sbjct: 319 NNNTKSNSNMKVLLVIDNISILSVVTK 345


>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 169 DRSYFTYTQSLSQPLDRKPEYSTAKEAFEKCLKSGKFCQKHFIK 300
           D S+  +  S   PLD    YS   +   K + +  +  ++FIK
Sbjct: 241 DMSHSIHHLSFGPPLDASVHYSNPLDGTVKKVSTADYRYEYFIK 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,664
Number of Sequences: 5004
Number of extensions: 25616
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)