Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31739
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1207 + 28418473-28421073                                         28   5.3  
01_06_1229 + 35551522-35552169                                         28   5.3  
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    27   7.0  
02_02_0106 + 6814391-6817007,6817086-6817462                           27   7.0  

>06_03_1207 + 28418473-28421073
          Length = 866

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 244 GHEPSVRPTSNCLCNVCLQIDYVCICLLVNTIFIGFLVVNEKIKMIIVKRCCD 86
           G  P+V   S+ +   C        CLL++ +    L  NE I  +++K CCD
Sbjct: 695 GLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 747


>01_06_1229 + 35551522-35552169
          Length = 215

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 523 RRPHAHPAMTPRSPHARRSRHKTSDK-HFFNSLTEHGS 413
           RRP A  +  P+S  AR  RH+ SD+     SL   GS
Sbjct: 34  RRPGAKLSTDPQSVAARERRHRISDRFRVLRSLVPGGS 71


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 185 DL*TNVTETVRGR--PDRRLVPRTSSSTPEPKG 277
           DL T+ T + RGR  P+  L PRT S +P PKG
Sbjct: 203 DLSTSETSS-RGRMLPEDFLAPRTRSLSPGPKG 234


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 250  CSGHEPSVRPTSNCLCNVCLQID 182
            C+G  PS+RP+   + N+ +Q D
Sbjct: 952  CTGEHPSMRPSMKDVLNILIQFD 974


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,030,085
Number of Sequences: 37544
Number of extensions: 223873
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)