Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31734
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   6.3  
SPCC569.02c |||S. pombe specific UPF0321 family protein 2|Schizo...    26   6.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   6.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 330 YIECVGINGTFTETTYTCPDNTFYDP 407
           YI+   +   FTE    C DN  Y+P
Sbjct: 728 YIQAACLMNQFTEVERICRDNNVYNP 753


>SPCC569.02c |||S. pombe specific UPF0321 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
 Frame = +3

Query: 18  IVLILVFCCVW--QVXAAVNCTXTGAGRFADDDDTTCQNYT----LCVYDTSTLDYLFYN 179
           ++L+   CC +   V A VN T     +          N T    + ++DT+ + +  YN
Sbjct: 1   MLLLFCICCAFIKLVLAEVNLTFVDYAKLPPKYAELLANLTDQHGMVLFDTADVRFEAYN 60

Query: 180 YQCPSTSVFNPNTAMC 227
           Y   + +  N +T  C
Sbjct: 61  YLVNNITEINTDTDAC 76


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 297 IADPSSTNCSSYIECVGINGTFTETTYTCPDN 392
           I DPSS+  S       I+G+  +T YTCP N
Sbjct: 167 IFDPSSSEKSD-----SISGSLFDTNYTCPVN 193


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 205 SIRTLQCVPILPTTYAM*RPQILPFVPKTGTSPIRAPQIVPVTSNA 342
           S+     VP++P   ++ +P   P VP+  + P   P  VPV   A
Sbjct: 648 SVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVP--QPPAVPVVPEA 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,154
Number of Sequences: 5004
Number of extensions: 51052
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)