Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31734
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    30   1.5  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    28   7.8  

>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 435 CNSTRKGSCLDRKKYYPDKCMWF 367
           CN  RKG C+D KK   +   WF
Sbjct: 256 CNIFRKGECIDEKKERQNMIQWF 278


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
 Frame = +1

Query: 67  STVRXPEQADLPMTMTRLVKTTRF--ASTILRL*IICSTTINVHRRPCSIRTLQCVPILP 240
           ST+  P    +P T T +  TT    A+          T       P ++ T    P+ P
Sbjct: 476 STMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTSPTAPANLTTPTTAPVNP 535

Query: 241 TTYAM*RPQILPFVPKTGTSPIRAPQIVPVTS 336
           T+         P  P   TSP  AP + PVT+
Sbjct: 536 TSSTT-----APTAPVNPTSPTTAPTVPPVTT 562


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
 Frame = +3

Query: 168  LFYNYQCPSTSVFNPNTAMCTDPXXXXXXXXXXXXXXXXED--GYIADPSSTNCSSYIEC 341
            LF +  C S+  FN  T  C  P                 +   +IAD  + NC  +  C
Sbjct: 1207 LFEHPSCQSSLAFNQLTGKCDYPQKVSGCENHGQTNGECSEHGSFIAD--ANNCEVFYRC 1264

Query: 342  VGINGTFTETTYTCPDNTFYDP 407
            V       +   TCP  T ++P
Sbjct: 1265 V----WGRKVVMTCPSGTVFNP 1282


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 138 CVYDTSTLDYLFYNYQCPSTSVFNPNTAMCTDP 236
           C+     ++ + YN++CP+   F+ +T MC  P
Sbjct: 578 CLKFIRCVNGISYNFECPNGLSFHADTMMCDRP 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,502
Number of Sequences: 27780
Number of extensions: 311823
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)