Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31733
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 4.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.1
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 7.2
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 9.5
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.5
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 9.5
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 25 9.5
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +3
Query: 297 YTLASFLAIFVVSTTQLIVTNGFLQGLGMGLLIPVSY--TSFNSYFTKKKVLYLS 455
YT+ F+A+ V + + + NG+ + LG G+++ + + TS +YF+ +VL+ S
Sbjct: 33 YTVWVFIALICVDSN-IKIRNGY-RNLGGGIVLIIFFFITSGLAYFSYFRVLFSS 85
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 4.1
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Frame = +3
Query: 300 TLASFLAIFVVSTTQLIVTNGFLQGLGMGLLIPVSYTSFNSYFTKKKVLYLSLCKA---- 467
+ A FLA + Q + LQG+GM L + +SYF ++ + S+
Sbjct: 566 SFAHFLANRLPHQAQFFIDLIVLQGIGMFPLKLIQLGKLSSYFVRRSFVPYSIASKKFET 625
Query: 468 ----SIGLITMLYPLFIKFTITQYGFRGTLAIICAISAHSIFGALV 593
S+G I + P+FI Y L ++ + + I G LV
Sbjct: 626 PDSFSVG-IFLPQPMFIMLICLCYSIISPLILVFGL-IYFIIGFLV 669
>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 570 HSIFGALVMHPVQWYMVKEIENV 638
H IFG L+M W +++ENV
Sbjct: 151 HPIFGRLLMLLKHWLFERDLENV 173
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +3
Query: 318 AIFVVSTTQLIVTN------GFLQGLGMGLLIPVSYTSFNSYFTKKK 440
A+F +ST+++I+ N G QG M LL V + + KK+
Sbjct: 113 ALFSISTSEVIIVNMWENQVGLYQGSNMALLKTVLEVNLQLFHNKKE 159
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 234 SANIALKSLSLRQVGLIGAFIYTLASFLAIF 326
S I L S + + G++GA +TL + AIF
Sbjct: 643 SIGITLFSFAKTRSGILGAASFTLVALFAIF 673
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 650 TIFSHVFNFFHHIPLYRMH 594
+I+SH +FFHH + H
Sbjct: 54 SIYSHTLHFFHHFTIACYH 72
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 90 IIPHRQRSPNLLREELIRTS 31
I+PH QR+P + E+L+ S
Sbjct: 243 IVPHAQRAPQMQGEKLLEIS 262
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 9.5
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Frame = +3
Query: 219 AIAGFSANIALKSLSLRQVGLIGAFIYTLASFLAIF--VVSTTQLIVTNG-------FLQ 371
A+ G ++ KS+ Q+G+ FI + SFL F ++S +V+ G F+Q
Sbjct: 120 AVVGIYCSVVHKSIL--QIGVTLTFICPMLSFLLCFRIIISQKAALVSIGISTLYYCFVQ 177
Query: 372 GLGMGLLIPVSYTSFNSYFTKKKVLYLSLCKASIGLITMLYPLFIKFTITQYGFRG 539
+ + + +SY F + L L ++ I +I FI F + FRG
Sbjct: 178 FMEVKSAL-ISYDRSLFKFYPIDLFVLLLSQSFICIIAFGVSDFINFQKEERNFRG 232
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 480 ITMLYPLFIKFTITQYG--FRGTLAIICAISAHSIFGALVMHPVQWYMVKEIEN 635
+T+L+ FT G G L IC +S I+G++ + +Q+ +I+N
Sbjct: 397 VTLLFGSIAYFTEAGVGGALFGWLLSICGLSTTFIWGSICLAHIQFRRAWKIQN 450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,616
Number of Sequences: 5004
Number of extensions: 52757
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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