Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31732
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    25   6.7  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   8.9  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   8.9  
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|...    25   8.9  

>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 380 AKAYTIKKLIKPNNI*TILNLTTDVKNK 297
           AKA  ++K I+  NI TI+N+ T +KN+
Sbjct: 9   AKA-ALEKAIQGKNIETIINIMTRLKNE 35


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 202 CIILKKY*RCALLLYILYKCGKFH 131
           C I K++   +  L+IL+ C +FH
Sbjct: 107 CSISKRFGTLSGALFILFSCAQFH 130


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 133 EISHTYREYREEVHNANIFLK*CIKDTLNQ*RKHYTHYIPCI 258
           +I + Y EYR+    +N F K  + +  N  ++   HY+P I
Sbjct: 371 DIDYMY-EYRDFTVESNAFPKDKMMEFFNSLQQSNQHYVPII 411


>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 417 YDFILYFYNHKFRQGLHYKKINKAKQYLDYSQFDNRRQEQKFDN 286
           YDF    +  K    +  + + +A++YL  S +D   +E+K  N
Sbjct: 38  YDFFALEWIEKLVDPVSLETLEEARKYLRKSDYDQVVKERKLVN 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,623
Number of Sequences: 5004
Number of extensions: 39543
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)