Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31728
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    27   1.8  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   2.4  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   4.3  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    26   5.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    25   7.5  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   9.9  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   9.9  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   9.9  

>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 534 VVTGAHKHLQRKCATHLENKFKVSGIVTTATPAFKPKRI 418
           +V G H   Q KC   L++   +  IV T T   KP+ +
Sbjct: 335 IVIGTHGIFQNKCLKDLQSCEYIEQIVVTNTYPIKPQAV 373


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 72  FADRWGFHKKKKNFLIQIFVQICILFLIQQKFHFE 176
           FAD +GF + KK  + + F  I  L L + ++ FE
Sbjct: 379 FADTYGFQEAKKGVIFESFPPILHLQLKRFEYDFE 413


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 144 GYRFER--IFVLRSFFFFYESPIY 79
           GY  E   +FV+ +FFFFYE  ++
Sbjct: 243 GYEIEATSLFVIGNFFFFYEMGLF 266


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 51  CKI*FIVFADRWGFHKKKKNFL 116
           CK+    F D WGF K+++++L
Sbjct: 530 CKMAACPFEDTWGFSKEEEDYL 551


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 264 LTFSCVIMEMCTNASSVNANIYLQTFL 344
           L+FS  ++  C N S  N+ +YL+  L
Sbjct: 100 LSFSAHLLSHCANRSIYNSTVYLEYLL 126


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 534 VVTGAHKHLQRKCATHLENKFKVS-GIVTTAT 442
           ++ G + +L    A+H+  K+K++ GI+ TA+
Sbjct: 82  IIVGTNGYLSTPAASHIIRKYKLTGGIILTAS 113


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 439 WGSRCNYT*DLKLILKVGGAFTL 507
           W S  NYT D+ + +K  G FT+
Sbjct: 284 WASNWNYTNDVPMRMKHRGMFTI 306


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 567 NLSNKKKI*CPKKSYVMYPLFYYEYGKIDRNLES 668
           NLSNK+    PK+  V  P F    G+ +RN++S
Sbjct: 43  NLSNKEDTHVPKRQKVSEPYF---RGETERNVKS 73


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 150 GIGYRFER--IFVLRSFFFFYE 91
           G GY  E   +FV+ +F FFYE
Sbjct: 263 GTGYEIEASSLFVIGNFLFFYE 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,786
Number of Sequences: 5004
Number of extensions: 54522
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)