Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31724
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    27   2.6  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   6.0  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    25   7.9  

>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 505 HIKDLEPETEILNKILNPN 561
           HIKDL+  T  L+K+L PN
Sbjct: 162 HIKDLQEVTNKLSKLLKPN 180


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +2

Query: 125  NHKYICNNKDFINFFRLNAPPVNLRIWS*RSAHWRHRFVTHVGEPLTTHS 274
            +HK+    K  ++FF       ++ I+S  S H   RF+  + + +  H+
Sbjct: 1134 SHKFFDKIKKSLSFFNFKRKEASINIFSVASGHLYERFLYIMTKSVIEHT 1183


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 210 SVVLIGGIDLLHMWVNLSPPTQLIVAT 290
           SVV++GG+D++   V LS    ++V T
Sbjct: 145 SVVIVGGMDMVTQAVALSKKPHVLVCT 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,910
Number of Sequences: 5004
Number of extensions: 54344
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)