Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31719
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical pr...    26   5.8  
CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical ...    26   5.8  

>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
 Frame = -2

Query: 262 CRPAKYCTS*LSLTFYFYFSYCVAFLLKPHTNQCHFHIFFAQTARNTELTKTHKSPTGR- 86
           C    +CT+ +    Y Y SY      K     CH +    +T R  +L    KS   + 
Sbjct: 134 CEKCSHCTAIICSHCYPYNSYSHPKTTKLVCRNCHLYFHHYKTDRPVKLEMKRKSRKNKK 193

Query: 85  -NFSVKTVN 62
            NF  K  N
Sbjct: 194 HNFEEKQPN 202


>Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical
           protein T02D1.4 protein.
          Length = 446

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 220 FYFYFSYCVAFLLKPHTNQCHFHIFFAQTARN 125
           F   F +C  +L    T +C+ H+FF   +++
Sbjct: 171 FVNLFGFCAMWLTVLMTAECYLHVFFPSHSKS 202


>CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical
           protein C50E10.3 protein.
          Length = 367

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 3   KPKRSIY*YTVPVRF--AEHLKLTVLTLKFRPVG 98
           +P+ ++  YT+PVRF   E+L++  LT++   VG
Sbjct: 228 RPEEAVRNYTLPVRFQAKENLRVFNLTVRVTVVG 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,228,822
Number of Sequences: 27780
Number of extensions: 102899
Number of successful extensions: 280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)