Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31717
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0528 + 10253372-10254556                                         29   2.8  
06_02_0011 - 10569471-10572245                                         28   6.6  

>09_02_0528 + 10253372-10254556
          Length = 394

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 488 CLSFLGTIQIFFKIYTTRQRFNMVPAY*NV 577
           CL FL   Q F ++ TT++ +N++ +Y +V
Sbjct: 317 CLVFLSNTQNFAEVATTKEYYNLIQSYPSV 346


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 423 IPFEQRGQVFYYYTQETVAGSVV*VFLELSKYSLKFIPHDRDLTWYLLIKM 575
           + + QR +VF+Y      A S+V + L LSK + K +   R + + +++ +
Sbjct: 64  VGYFQRYEVFFYCNATAFAASLVLIILLLSKSATKHVLWLRSMQFTMILDL 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,561,002
Number of Sequences: 37544
Number of extensions: 242493
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)