Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31717
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 432 EQRGQVFYYYTQETVA 479
           ++RG++FYY  Q+ +A
Sbjct: 228 DRRGELFYYMHQQIMA 243


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 510 SKYSLKFIPHDRDL 551
           +KY+LKF P D+ +
Sbjct: 880 NKYALKFFPFDKHI 893



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 371  NLHVTHFKNLQ*NPVFVDPF 430
            NL +T  KN+Q    FV PF
Sbjct: 967  NLRLTFSKNVQGRVGFVTPF 986


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 524 KIYTTRQRFNMVPAY*NVTIK 586
           KI+ T  R+N VP+  NV  K
Sbjct: 75  KIFVTMLRYNGVPSSLNVISK 95


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 524 KIYTTRQRFNMVPAY*NVTIK 586
           KI+ T  R+N VP+  NV  K
Sbjct: 75  KIFVTMLRYNGVPSSLNVISK 95


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 524 KIYTTRQRFNMVPAY*NVTIK 586
           KI+ T  R+N VP+  NV  K
Sbjct: 75  KIFVTMLRYNGVPSSLNVISK 95


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 553 HGTCLLKCYNKILFI 597
           + TC+L C+  I +I
Sbjct: 102 YATCVLSCWTNIYYI 116


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 553 HGTCLLKCYNKILFI 597
           + TC+L C+  I +I
Sbjct: 155 YATCVLSCWTNIYYI 169


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -3

Query: 550 KSLSCGINFKEYLDSSKKTQTTLPATVS 467
           + +SC      ++++  KT  +LP+T++
Sbjct: 656 RPISCHTTPDSFIEAPNKTLPSLPSTLT 683


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 284 SSFNGVFLGMQFGVKYAYKI 225
           SS+N V + +QF V Y + I
Sbjct: 692 SSYNCVPINVQFSVLYGFVI 711


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,359
Number of Sequences: 438
Number of extensions: 3441
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)