Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31715
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 33 0.26
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 32 0.34
01_01_1160 + 9242541-9242825 32 0.45
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 31 0.59
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 31 0.78
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 1.8
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 29 2.4
12_01_0626 - 5147763-5147879,5148175-5148255,5148336-5148506 29 4.2
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 5.5
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118... 28 5.5
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 28 7.3
10_07_0062 - 12499872-12501350 28 7.3
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 28 7.3
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 28 7.3
04_03_1037 - 21901989-21902468,21903308-21903526,21903984-219041... 27 9.7
03_06_0618 - 35132077-35132830,35133690-35135212 27 9.7
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755... 27 9.7
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 27 9.7
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 27 9.7
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 289 LVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDG 417
++ +++ S PP +AL P P+++KD+ L+PR P S G
Sbjct: 392 VIPVQIKDVQSQPPKEALSPAIPVQIKDV--QLQPRNEPVSIG 432
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +1
Query: 346 PVTPMEVKDLIKDLRPRKAPGSDG--ISN--RVIKLLPVQLIVMLASIFNAAMAN 498
P + E+KD + + P KAPG DG + N + K P+ L +L I + +AN
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206
>01_01_1160 + 9242541-9242825
Length = 94
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 205 DEKAELLADTLQTQCTPSTQS-VDPVHVELVDSEVERRASLPPSDAL 342
DE + +AD ++ TPS+ S VDP E V + RRAS D L
Sbjct: 21 DEAVKAVADAVRNSFTPSSGSDVDPTTGEAVAAAAARRASKAAHDTL 67
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 31.5 bits (68), Expect = 0.59
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 361 EVKDLIKDLRPRKAPGSDGISNRVI-KLLPV--QLIVMLASIFNAAMANCIFPAVWKEAD 531
EV +LIK ++P KAP DGI+ + K P+ Q LA+ F+A + + P ++
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPI--NKSF 282
Query: 532 VIGIHXPGKPKNHPTSYRPISLL 600
+ + P+ YRPISL+
Sbjct: 283 ITLVPKKSSPET-VNDYRPISLM 304
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 205 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVK 369
DE A +L D S S+D + +E + +++ ++LPP+ LPP P +V+
Sbjct: 1574 DEAAPILEDRGMAPSVSSRLSLDEI-IE-ISCDLDAVSALPPAKPLPPQPPTQVR 1626
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.9 bits (64), Expect = 1.8
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 9/158 (5%)
Frame = +1
Query: 199 DDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKD-- 372
D++ + L+T T Q V L V R +DA+ E K+
Sbjct: 836 DENGAIHSMTSVLETMATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEE 895
Query: 373 ---LIKDLRPRKAPGSDGISNRVIK----LLPVQLIVMLASIFNAAMANCIFPAVWKEAD 531
I + P K+PG DG R + L +I+ + + F + + P +
Sbjct: 896 IAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSG----LMPEGVNDTA 951
Query: 532 VIGIHXPGKPKNHPTSYRPISLLMSLGKLYERLLYKRL 645
++ I +P + YRPISL + K+ + L RL
Sbjct: 952 IVLIPKKDQPID-LKDYRPISLCNVVYKVVSKCLVNRL 988
>04_04_1079 -
30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 29.5 bits (63), Expect = 2.4
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Frame = +1
Query: 88 RTRALSKVLLPLSSYSQI----GYGSNYAPPRRPLSRLAAFDDDEKAELLADTLQTQCTP 255
R L KV+ PL + +I G + + PP P + A D+ + DT+ + P
Sbjct: 362 RHEILQKVVRPLKGHLEILVPTGGLNIHRPPDEPCWSILAHSLDDVEKFFKDTVDNRFFP 421
Query: 256 STQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 435
++ + D EL + + SD E ++KDL + PG S + +
Sbjct: 422 TSPNTD----ELSNLSISLMIQFRFSDYSICYVLREEGIILKDLESKWEPGDR--SGKWL 475
Query: 436 KLLP 447
KL P
Sbjct: 476 KLKP 479
>12_01_0626 - 5147763-5147879,5148175-5148255,5148336-5148506
Length = 122
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 313 RASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGI 420
R S P LPP P + K L ++ +P A G+D I
Sbjct: 17 RMSFSPLGLLPPPDPQQQKPLRQERQPEMAIGADKI 52
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 131 TLKSDTVVTMPPL-VGPSADSRRSMMTKKQSCWPIHCKPSARPA 259
+LKS T+ P + GP+AD RR T K + W +P+A PA
Sbjct: 2 SLKSLTLGVRPAVDAGPTADGRRPW-TAKDARWRGGQRPAATPA 44
>02_01_0171 -
1179095-1179388,1179668-1179801,1180036-1180900,
1180998-1181258,1181424-1181621,1181752-1181982,
1185337-1185648,1185750-1186247
Length = 930
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 148 GSNYAPPRRPLSRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEV 306
G+ Y P +RPLS A + + +A+++ + P+ DPVH+ +D+++
Sbjct: 758 GAKYLPRKRPLS---AIRSEHGSVAVANSVDSTDDPALDE-DPVHIPRMDAKL 806
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 27.9 bits (59), Expect = 7.3
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -2
Query: 551 GXCMPITSASFHTAGKIQFAIAALKIDANITMS---WTGRSLITRLDIPSEPGALRGRRS 381
G C+ +A F+T ++ + A DA + S W RSL+ R D+P ALR
Sbjct: 130 GSCL---NAGFYTRASNEY-VRASGWDARLVNSSYRWVERSLVFRPDVPPWQAALR---- 181
Query: 380 LIKSLTSIGVTGGN 339
+L +GVT N
Sbjct: 182 --DALLEVGVTPDN 193
>10_07_0062 - 12499872-12501350
Length = 492
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +2
Query: 335 MRYHPSPRW-KLKT*SKTYVLARLPVPTVYPTALLNFYPSNSS*CWHLFSMPLWRTVSFP 511
MR+ P W L T V + + T +L Y ++ C H +P+ + FP
Sbjct: 366 MRHPAIPGWVSLLEMDSTLVFSAVECTTRIDLWVLQDYERSTWACKHRIELPMAQIRQFP 425
Query: 512 RCGKKRT-LSAYIXPVNQKIIRRATARL 592
C + SA + V ++ R + R+
Sbjct: 426 ECNLEHLGWSAMVVSVEGDVLVRCSNRI 453
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 298 SEVERRASLPPSDALPPVTPMEV 366
SEV RR PP LPP+ PM++
Sbjct: 178 SEVARRYYEPPQVMLPPLAPMQL 200
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 458 MSWTGRSLITRLDIP-SEPGA 399
MSW RSL T L+IP +PGA
Sbjct: 1 MSWLARSLATSLNIPEDDPGA 21
>04_03_1037 -
21901989-21902468,21903308-21903526,21903984-21904106,
21904225-21904392
Length = 329
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 151 SNYAPPRRPLSRLAAFDDDEKAELLADTL-QTQCTPSTQSVD 273
S+ APP P LAAF DD ++ AD L Q+ S Q V+
Sbjct: 17 SSRAPPPPPARPLAAFADDGDDDVEADILRQSYKKRSQQKVE 58
>03_06_0618 - 35132077-35132830,35133690-35135212
Length = 758
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 234 IANPVHAQHSIRGPCSCR 287
+ +P H H RG CSCR
Sbjct: 738 VRDPTHFHHFTRGSCSCR 755
>03_02_0650 +
10174905-10175000,10175321-10175376,10175467-10175540,
10176215-10176753,10176845-10177186,10177520-10177879,
10177982-10178193,10178881-10179169,10179469-10180152
Length = 883
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 447 G*KFNNAVGYTVGTGSLART*VFDQVFNFHRGDGW*RIRGWQGGS 313
G F N GYT TG A+T +F GDGW + G QG +
Sbjct: 103 GGNFGNREGYTYFTGGGAKT------SHFSSGDGW-QTMGGQGNT 140
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 158 MPPLVGPSADSRRSMMTKKQSCWPIHCKPSARPALNPWTLF 280
+P L+ P A + + K +C+P PS+ P + P +F
Sbjct: 648 IPMLLYPPAKPHTTAIVKGSTCYPPPPPPSSTPPVEPVAVF 688
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 317 PPCHPLMRYHPSPRWKLKT*SKTYVLARLPVPTVYPTALLNFYPSNSS*CWHLFSMPL 490
PP + R HP P + +Y L P P+ Y + L+ SN + HL ++ L
Sbjct: 24 PPGRAVARLHPLPLLVAAAFAASYHLLVAPAPSYYRSLFLSL-GSNDTAAAHLHALTL 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,662,687
Number of Sequences: 37544
Number of extensions: 431637
Number of successful extensions: 1182
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -