Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31710
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    29   0.54 
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    26   5.1  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   8.8  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   8.8  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   8.8  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 523 TTYIKPVY*ALTACISSLSVKDYP*FNAAFPKIITQSNHLF 401
           T++   ++  LT C S    KD+P ++ + P+ + Q + LF
Sbjct: 540 TSFPNGIFTLLTHCYSPTCAKDHPCYSISCPRRLEQQHRLF 580


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 42  FAREAFTDADNFGISFPMDLDVKIKAVLL 128
           F+R  +T  D F +S P ++ V   + LL
Sbjct: 207 FSRSGYTGEDGFEVSIPEEVSVDFASTLL 235


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 179 IVVAFFKEHKIYEKTCSKEYSFDFDVQVHRETYP 78
           IV+AFF  +KIY+++     S   D+     TYP
Sbjct: 527 IVIAFFIGYKIYDRSHIPSLS-KLDLDTGLRTYP 559


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 322 KTCKIVSKLKSHSWKLQ 272
           KTCK+++KL +HS  +Q
Sbjct: 516 KTCKLMAKLPAHSGPVQ 532


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 96  DLDVKIKAVLLGACFLIDFMFFEK 167
           D+ ++ +AV+LG+   IDF +F +
Sbjct: 281 DMSLEERAVMLGSAVTIDFDYFSR 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,757
Number of Sequences: 5004
Number of extensions: 49200
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)