Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31710
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0828 - 32263312-32263386,32263477-32263563,32263659-322637...    28   5.2  
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379...    28   6.9  
02_03_0238 + 16730444-16730448,16730484-16730586,16732043-167320...    27   9.1  

>01_06_0828 -
           32263312-32263386,32263477-32263563,32263659-32263777,
           32263886-32264124,32264219-32264275,32264370-32264456,
           32264545-32265086,32265157-32265405
          Length = 484

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  GKITKSWSGFAREAFTDADNF 77
           G   ++WSGF+R+AFT    F
Sbjct: 232 GSFPEAWSGFSRKAFTSLGGF 252


>06_03_0022 -
           15536811-15536899,15537485-15537664,15537706-15537982,
           15538680-15538883,15539431-15539496,15539933-15539953,
           15541622-15541731,15543244-15544236,15544928-15544955,
           15545035-15545093,15545177-15545204,15545453-15545475,
           15545784-15545853,15546980-15547033,15547127-15547169,
           15548126-15548175
          Length = 764

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 527 NSLFAGFMFYWTXNLKV*LIFYVDCYLY 610
           N++ +G++ +W  NL    I   +CYLY
Sbjct: 461 NNMESGYLVFWCNNLTRYAILVNECYLY 488


>02_03_0238 +
           16730444-16730448,16730484-16730586,16732043-16732099,
           16732198-16732346,16732450-16732545,16732620-16732695,
           16732810-16732883,16732991-16733408
          Length = 325

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = -2

Query: 229 KKKKFSCVEEI*IHQLRLLLPFSKNIKSMRKHAPRSTALILTSRSIGKLIPKLSASVKAS 50
           K+  + C+ E  + Q    L    ++  MR++ PR   + L   S  + + K+   ++ S
Sbjct: 31  KRFLWKCISEEELLQATKELDKELSMHEMRRNTPRQEKIFLQRNSNAQALAKVIVQLQTS 90

Query: 49  RANPDHDFVI 20
             +P+    I
Sbjct: 91  SCSPEQKLPI 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,621
Number of Sequences: 37544
Number of extensions: 267116
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)